C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: arginine-glutamic acid dipeptide (RE) repeats
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142599 RERE 9606 - 1:8352397-8817643 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337907 RERE-001 8352397-8817465 protein_coding
  ENST00000377464 RERE-002 8352406-8525939 protein_coding
  ENST00000400907 RERE-015 8353943-8656371 protein_coding
  ENST00000400908 RERE-014 8354626-8817643 protein_coding
  ENST00000460659 RERE-005 8365855-8423419 processed_transcript
  ENST00000464367 RERE-012 8363710-8364838 non_stop_decay
  ENST00000464972 RERE-007 8422790-8526027 protein_coding
  ENST00000465125 RERE-004 8365880-8424234 processed_transcript
  ENST00000467350 RERE-011 8352909-8355082 processed_transcript
  ENST00000468247 RERE-009 8656193-8703219 protein_coding
  ENST00000469251 RERE-008 8541224-8590841 processed_transcript
  ENST00000476556 RERE-003 8354093-8423666 protein_coding
  ENST00000480342 RERE-010 8464970-8753838 retained_intron
  ENST00000488215 RERE-013 8364056-8425212 protein_coding
  ENST00000492766 RERE-006 8365876-8423666 processed_transcript
  ENST00000505225 RERE-018 8355521-8362844 protein_coding
  ENST00000507012 RERE-017 8495151-8526039 processed_transcript
  ENST00000514428 RERE-016 8556476-8624380 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000337907ENST00000377464ENST00000400907ENST00000400908ENST00000468247ENST00000469251ENST00000480342
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000337907 N/A 2.475±0.00 N/A N/A N/A 1.012±0.00 N/A N/A 9.498±0.00 4.959±0.00 11.108±0.00
ENST00000377464 N/A 7.941±0.00 N/A N/A 0.656±0.00 1.949±1.19 3.259±0.00 7.881±0.00 6.531±3.28 3.774±0.00 5.819±0.00
ENST00000400907 N/A 5.162±0.00 N/A N/A N/A 1.770±0.00 N/A N/A 4.822±0.00 N/A N/A
ENST00000400908 2.680±0.00 N/A 3.273±0.00 2.854±0.00 0.562±0.00 1.557±0.00 1.047±0.00 2.909±0.00 4.689±0.00 N/A 4.110±0.00
ENST00000468247 N/A N/A N/A N/A N/A N/A N/A N/A 69.631±0.00 31.392±0.00 69.904±0.00
ENST00000469251 N/A 112.782±0.00 N/A N/A N/A 35.561±0.00 N/A N/A N/A N/A N/A
ENST00000480342 N/A N/A N/A N/A N/A 1.640±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0001 VISTA 1:7770379-8371827

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006607 TAS NLS-bearing protein import into nucleus
GO:0007275 IEA multicellular organismal development
GO:0008267 TAS poly-glutamine tract binding
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077353 rerea arginine-glutamic acid dipeptide (RE) repeats a protein_coding Danio_rerio
ENSMUSG00000039852 Rere arginine glutamic acid dipeptide (RE) repeats protein_coding Mus_musculus

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