C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377759 SNX5-019 ENSG00000089006 9606 - 20:17941597-17968720 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377759
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377759 10.256±0.00 13.458±0.00 3.172±0.00 9.499±1.99 13.726±7.51 8.012±0.51 6.120±0.00 21.340±0.00 4.948±1.55 10.419±0.57 7.495±4.08 39.699±0.00 9.510±2.72 8.599±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0001 VISTA 20:17559199-18160694
CIL_0002MX CIL_0002MX_0001 CGP 20:17693672-17968980

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006886 IBA intracellular protein transport
GO:0006907 IDA pinocytosis
GO:0031234 IDA extrinsic component of cytoplasmic side of plasma membrane
GO:0031313 IDA extrinsic component of endosome membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0031901 IDA early endosome membrane
GO:0035091 ISS:IEA phosphatidylinositol binding
GO:0070685 IDA macropinocytic cup

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028909 Snx5-003 protein_coding Mus_musculus 0 1995
ENSMUST00000110030 Snx5-001 protein_coding Mus_musculus 0 1881
ENSMUST00000153033 Snx5-004 processed_transcript Mus_musculus 0 429
ENSMUST00000156936 Snx5-005 processed_transcript Mus_musculus 0 239
ENSMUST00000124389 Snx5-008 processed_transcript Mus_musculus 8e-37 159
ENSMUST00000155509 Snx5-002 processed_transcript Mus_musculus 5e-29 134

Loading