C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377768 SNX5-001 ENSG00000089006 9606 - 20:17941597-17968980 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartLiverOvaryPlacentaTestisENST00000377768
Transcript ID Adrenal Bladder Brain Heart Liver Ovary Placenta Testis
ENST00000377768 12.392±0.00 3.669±0.00 4.264±0.00 1.287±0.00 3.171±0.00 17.951±7.41 10.478±4.19 11.435±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0001 VISTA 20:17559199-18160694
CIL_0002MX CIL_0002MX_0001 CGP 20:17693672-17968980

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006886 IBA intracellular protein transport
GO:0006907 IDA pinocytosis
GO:0031234 IDA extrinsic component of cytoplasmic side of plasma membrane
GO:0031313 IDA extrinsic component of endosome membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0031901 IDA early endosome membrane
GO:0035091 ISS:IEA phosphatidylinositol binding
GO:0070685 IDA macropinocytic cup

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110030 Snx5-001 protein_coding Mus_musculus 0 1951
ENSMUST00000028909 Snx5-003 protein_coding Mus_musculus 0 1881
ENSMUST00000153033 Snx5-004 processed_transcript Mus_musculus 0 429
ENSMUST00000156936 Snx5-005 processed_transcript Mus_musculus 0 239
ENSMUST00000155509 Snx5-002 processed_transcript Mus_musculus 7e-38 163
ENSMUST00000124389 Snx5-008 processed_transcript Mus_musculus 9e-37 159

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