C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377967 KDM6A-001 ENSG00000147050 9606 + X:44873511-45112602 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000377967
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000377967 0.349±0.00 0.769±0.00 0.370±0.00 0.973±0.00 0.567±0.11 0.586±0.00 0.564±0.00 2.128±0.00 1.163±0.00 1.165±0.40 0.725±0.21 1.111±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QA CIL_0005QA_0001 CGP X:44844004-45112602
CIL_0003JA CIL_0003JA_0002 CGP X:44873177-45200901

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001701 IEA in utero embryonic development
GO:0001843 IEA neural tube closure
GO:0003007 IEA heart morphogenesis
GO:0003016 IEA respiratory system process
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0007507 IEA heart development
GO:0010468 IEA regulation of gene expression
GO:0021915 IEA neural tube development
GO:0032525 IEA somite rostral/caudal axis specification
GO:0035097 IDA histone methyltransferase complex
GO:0035264 IEA multicellular organism growth
GO:0042802 IEA identical protein binding
GO:0046872 IEA metal ion binding
GO:0048333 IEA mesodermal cell differentiation
GO:0048568 IEA embryonic organ development
GO:0048570 IEA notochord morphogenesis
GO:0051213 IEA dioxygenase activity
GO:0051568 ISS histone H3-K4 methylation
GO:0055114 IEA oxidation-reduction process
GO:0060070 IEA canonical Wnt signaling pathway
GO:0071558 IEA histone demethylase activity (H3-K27 specific)
GO:0072358 IEA cardiovascular system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044484 Kdm6a-001 protein_coding Mus_musculus 0 8410
ENSMUST00000052368 Kdm6a-002 protein_coding Mus_musculus 0 8331
ENSMUST00000130978 Kdm6a-003 retained_intron Mus_musculus 0 4623
ENSMUST00000154004 Uty-005 protein_coding Mus_musculus 0 2006
ENSMUST00000139365 Uty-004 protein_coding Mus_musculus 0 2006
ENSMUST00000069309 Uty-001 protein_coding Mus_musculus 0 2006
ENSMUST00000154666 Uty-007 nonsense_mediated_decay Mus_musculus 0 2006
ENSMUST00000143286 Uty-008 protein_coding Mus_musculus 0 2006
ENSMUST00000143958 Uty-002 nonsense_mediated_decay Mus_musculus 0 1295
ENSMUST00000137048 Uty-006 protein_coding Mus_musculus 0 1153
ENSDART00000144623 kdm6a-001 protein_coding Danio_rerio 0 1014
ENSDART00000088469 kdm6a-201 protein_coding Danio_rerio 0 1013
ENSMUST00000155161 Kdm6a-004 retained_intron Mus_musculus 0 468
ENSMUST00000154527 Uty-010 retained_intron Mus_musculus 0 298
ENSMUST00000150715 Uty-011 nonsense_mediated_decay Mus_musculus 0 294
ENSMUST00000157073 Uty-003 processed_transcript Mus_musculus 0 278
ENSMUST00000133976 Uty-009 retained_intron Mus_musculus 3e-30 139
ENSMUST00000185837 Uty-012 retained_intron Mus_musculus 1e-39 169

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