C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052368 Kdm6a-002 ENSMUSG00000037369 10090 + X:18162575-18279936 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000052368
Transcript ID Adrenal Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000052368 2.162±1.40 1.207±0.07 0.633±0.00 0.516±0.03 0.368±0.00 2.474±0.52 1.049±0.21 0.448±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QA CIL_0005QA_0002 CGP X:18145857-18279936
CIL_0003JA CIL_0003JA_0003 CGP X:18162575-18461397

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001701 IMP in utero embryonic development
GO:0001843 IMP neural tube closure
GO:0003007 IMP heart morphogenesis
GO:0003016 IMP respiratory system process
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0007507 IMP heart development
GO:0010468 IMP regulation of gene expression
GO:0021915 IMP neural tube development
GO:0032525 IMP somite rostral/caudal axis specification
GO:0035097 ISO histone methyltransferase complex
GO:0035264 IMP multicellular organism growth
GO:0042802 IDA identical protein binding
GO:0046872 IEA metal ion binding
GO:0048333 IMP mesodermal cell differentiation
GO:0048568 IMP embryonic organ development
GO:0048570 IMP notochord morphogenesis
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process
GO:0060070 IMP canonical Wnt signaling pathway
GO:0071557 IEA histone H3-K27 demethylation
GO:0071558 IDA histone demethylase activity (H3-K27 specific)
GO:0072358 IMP cardiovascular system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000144623 kdm6a-001 protein_coding Danio_rerio 0 976
ENSDART00000088469 kdm6a-201 protein_coding Danio_rerio 0 974
ENST00000329134 UTY-003 protein_coding Homo_sapiens 0 1790
ENST00000331397 UTY-001 protein_coding Homo_sapiens 0 3485
ENST00000362096 UTY-002 protein_coding Homo_sapiens 0 2691
ENST00000377967 KDM6A-001 protein_coding Homo_sapiens 0 8331
ENST00000382893 UTY-004 protein_coding Homo_sapiens 0 749
ENST00000382896 UTY-201 protein_coding Homo_sapiens 0 5210
ENST00000382899 KDM6A-201 protein_coding Homo_sapiens 0 6072
ENST00000414389 KDM6A-002 protein_coding Homo_sapiens 0 6078
ENST00000431196 KDM6A-008 protein_coding Homo_sapiens 0 767
ENST00000433797 KDM6A-003 protein_coding Homo_sapiens 0 6076
ENST00000451692 KDM6A-005 protein_coding Homo_sapiens 0 619
ENST00000474365 UTY-007 processed_transcript Homo_sapiens 0 691
ENST00000475233 KDM6A-004 processed_transcript Homo_sapiens 0 691
ENST00000478900 UTY-006 processed_transcript Homo_sapiens 0 667
ENST00000479423 KDM6A-009 processed_transcript Homo_sapiens 0 462
ENST00000484732 KDM6A-007 processed_transcript Homo_sapiens 0 580
ENST00000485072 KDM6A-006 processed_transcript Homo_sapiens 0 278
ENST00000536777 KDM6A-202 protein_coding Homo_sapiens 0 6074
ENST00000537580 UTY-202 protein_coding Homo_sapiens 0 4551
ENST00000538878 UTY-203 protein_coding Homo_sapiens 0 3049
ENST00000540140 UTY-204 protein_coding Homo_sapiens 0 3485
ENST00000543216 KDM6A-203 protein_coding Homo_sapiens 0 3672
ENST00000545955 UTY-205 protein_coding Homo_sapiens 0 3485
ENST00000611820 KDM6A-204 protein_coding Homo_sapiens 0 6072
ENST00000612274 UTY-206 protein_coding Homo_sapiens 0 3567
ENST00000617789 UTY-207 protein_coding Homo_sapiens 0 3485
ENST00000618474 UTY-208 protein_coding Homo_sapiens 0 3485
ENST00000621147 KDM6A-205 protein_coding Homo_sapiens 0 2270
ENST00000623120 UTY-209 protein_coding Homo_sapiens 0 3037
ENST00000623507 UTY-210 protein_coding Homo_sapiens 0 2684
ENST00000623605 UTY-208 protein_coding Homo_sapiens 0 3037
ENST00000623852 UTY-203 protein_coding Homo_sapiens 0 1790
ENST00000624098 UTY-202 protein_coding Homo_sapiens 0 4551
ENST00000624415 UTY-201 protein_coding Homo_sapiens 0 2601
ENST00000624483 UTY-206 protein_coding Homo_sapiens 0 3037
ENST00000624574 UTY-205 protein_coding Homo_sapiens 0 4761
ENST00000624729 UTY-207 protein_coding Homo_sapiens 0 3037
ENST00000624787 UTY-209 protein_coding Homo_sapiens 0 3037
ENST00000624950 UTY-204 protein_coding Homo_sapiens 0 3567

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