C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108068 Ubap2-001 ENSMUSG00000028433 10090 - 4:41194313-41275144 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartLiverMuscleOvaryPlacentaTestisENSMUST00000108068
Transcript ID Adipose Brain Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000108068 2.009±0.08 3.077±0.00 2.695±0.00 1.923±0.00 3.481±0.00 3.173±0.00 2.114±0.00 22.648±8.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AS CIL_0006AS_0002 CGP 4:41135743-41275144
CIL_0006B3 CIL_0006B3_0002 CGP 4:41194313-41314889

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360802 UBAP2-201 protein_coding Homo_sapiens 0 3256
ENST00000379225 UBAP2-008 protein_coding Homo_sapiens 0 726
ENST00000379235 UBAP2-007 protein_coding Homo_sapiens 0 1393
ENST00000379238 UBAP2-001 protein_coding Homo_sapiens 0 3350
ENST00000379239 UBAP2-202 protein_coding Homo_sapiens 0 1448
ENST00000412543 UBAP2-005 protein_coding Homo_sapiens 0 695
ENST00000421278 UBAP2-004 protein_coding Homo_sapiens 0 508
ENST00000459988 UBAP2-009 processed_transcript Homo_sapiens 0 215
ENST00000462799 UBAP2-006 processed_transcript Homo_sapiens 0 340
ENST00000474372 UBAP2-002 processed_transcript Homo_sapiens 0 571
ENST00000480885 UBAP2-010 processed_transcript Homo_sapiens 0 318
ENST00000488443 UBAP2-003 nonsense_mediated_decay Homo_sapiens 3e-35 152
ENST00000539807 UBAP2-203 protein_coding Homo_sapiens 0 1264

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