C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379516 SNX2-001 ENSG00000205302 9606 + 5:122774996-122830108 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379516 13.703±0.00 16.249±0.00 1.902±0.00 5.716±1.84 8.852±6.87 7.106±5.87 4.006±2.55 9.645±7.65 7.071±0.67 6.453±1.79 3.516±2.27 12.038±10.60 16.404±2.44 10.902±4.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0002 CGP 5:122311354-122830108
CIL_0004B0 CIL_0004B0_0001 CGP 5:122774996-123029354

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005154 IDA epidermal growth factor receptor binding
GO:0005158 IDA insulin receptor binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006886 IBA:IEA intracellular protein transport
GO:0006897 IEA endocytosis
GO:0010008 IDA endosome membrane
GO:0016020 IDA membrane
GO:0016023 IBA cytoplasmic membrane-bounded vesicle
GO:0030904 IEA retromer complex
GO:0035091 IBA:IEA phosphatidylinositol binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:0051259 IDA protein oligomerization
GO:0070062 IDA extracellular vesicular exosome
GO:1990459 IDA transferrin receptor binding
GO:1990460 IDA leptin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037850 Snx2-201 protein_coding Mus_musculus 0 2235
ENSMUST00000120410 Gm12543-001 transcribed_processed_pseudogene Mus_musculus 0 804
ENSMUST00000123665 Snx30-004 processed_transcript Mus_musculus 0 370

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