C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205302 SNX2 9606 + 5:122774996-122830108 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379516 SNX2-001 122774996-122830108 protein_coding
  ENST00000505854 SNX2-004 122775095-122803869 retained_intron
  ENST00000505934 SNX2-012 122775082-122815973 protein_coding
  ENST00000506847 SNX2-009 122816923-122829773 processed_transcript
  ENST00000506874 SNX2-003 122775082-122775676 processed_transcript
  ENST00000507321 SNX2-007 122827321-122829755 retained_intron
  ENST00000507852 SNX2-010 122827434-122828046 retained_intron
  ENST00000509281 SNX2-006 122815568-122817340 retained_intron
  ENST00000510372 SNX2-002 122795536-122829671 processed_transcript
  ENST00000511365 SNX2-005 122803494-122808711 retained_intron
  ENST00000512394 SNX2-013 122775079-122817018 nonsense_mediated_decay
  ENST00000514030 SNX2-008 122817275-122827752 retained_intron
  ENST00000514949 SNX2-011 122775203-122829755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379516ENST00000505854ENST00000505934ENST00000506847ENST00000510372ENST00000514030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379516 13.703±0.00 16.249±0.00 1.902±0.00 5.716±1.84 8.852±6.87 7.106±5.87 4.006±2.55 9.645±7.65 7.071±0.67 6.453±1.79 3.516±2.27 12.038±10.60 16.404±2.44 10.902±4.48
ENST00000505854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.544±0.00 N/A N/A N/A
ENST00000505934 N/A N/A 2.501±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506847 N/A 12.080±0.00 N/A 2.670±0.00 N/A 8.191±0.00 N/A 10.159±0.00 4.072±0.00 9.655±0.00 9.211±0.00 N/A N/A 12.674±0.00
ENST00000510372 8.860±0.00 11.202±0.00 N/A 2.727±1.20 10.108±0.00 10.018±0.00 5.508±0.00 8.458±0.00 3.080±0.00 7.220±1.28 8.740±0.00 4.187±1.46 11.658±7.09 12.553±0.27
ENST00000514030 N/A N/A N/A 7.773±0.00 4.677±0.00 2.583±0.00 N/A 5.369±0.00 8.861±0.00 9.183±0.00 1.868±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0002 CGP 5:122311354-122830108
CIL_0004B0 CIL_0004B0_0001 CGP 5:122774996-123029354

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005154 IDA epidermal growth factor receptor binding
GO:0005158 IDA insulin receptor binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006886 IBA:IEA intracellular protein transport
GO:0006897 IEA endocytosis
GO:0010008 IDA endosome membrane
GO:0016020 IDA membrane
GO:0016023 IBA cytoplasmic membrane-bounded vesicle
GO:0030904 IEA retromer complex
GO:0035091 IBA:IEA phosphatidylinositol binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:0051259 IDA protein oligomerization
GO:0070062 IDA extracellular vesicular exosome
GO:1990459 IDA transferrin receptor binding
GO:1990460 IDA leptin receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053356 SNX2 sorting nexin 2 protein_coding Danio_rerio
ENSMUSG00000034484 Snx2 sorting nexin 2 protein_coding Mus_musculus

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