C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037850 Snx2-201 ENSMUSG00000034484 10090 + 18:53176365-53220860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037850 20.039±3.31 11.724±3.20 44.531±1.02 10.691±6.99 22.478±3.04 12.984±4.13 7.649±0.44 15.624±2.26 24.137±14.03 18.707±2.38 7.000±1.17 16.876±8.74 55.303±9.67 5.109±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KK CIL_0005KK_0003 CGP 18:52767709-53220860
CIL_0004B0 CIL_0004B0_0002 CGP 18:53176365-53390823

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005154 IEA epidermal growth factor receptor binding
GO:0005158 IEA insulin receptor binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0006897 IEA endocytosis
GO:0010008 ISS endosome membrane
GO:0016020 IDA membrane
GO:0016023 IBA cytoplasmic membrane-bounded vesicle
GO:0030904 IEA retromer complex
GO:0035091 IBA phosphatidylinositol binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 IEA protein complex
GO:0051259 IEA protein oligomerization
GO:0070062 IEA extracellular vesicular exosome
GO:1990459 IEA transferrin receptor binding
GO:1990460 IEA leptin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379516 SNX2-001 protein_coding Homo_sapiens 0 2235
ENST00000505854 SNX2-004 retained_intron Homo_sapiens 0 894
ENST00000505934 SNX2-012 protein_coding Homo_sapiens 0 1061
ENST00000506847 SNX2-009 processed_transcript Homo_sapiens 0 856
ENST00000506874 SNX2-003 processed_transcript Homo_sapiens 2.00386e-43 178
ENST00000507321 SNX2-007 retained_intron Homo_sapiens 5.00264e-43 178
ENST00000507852 SNX2-010 retained_intron Homo_sapiens 8e-31 137
ENST00000509281 SNX2-006 retained_intron Homo_sapiens 0 385
ENST00000510372 SNX2-002 processed_transcript Homo_sapiens 0 1917
ENST00000511365 SNX2-005 retained_intron Homo_sapiens 0 296
ENST00000512394 SNX2-013 nonsense_mediated_decay Homo_sapiens 0 773
ENST00000514030 SNX2-008 retained_intron Homo_sapiens 0 782
ENST00000514949 SNX2-011 protein_coding Homo_sapiens 0 2061

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