C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1B (SWI-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115797 Arid1b-201 ENSMUSG00000069729 10090 + 17:4995074-5347656 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastLiverMusclePlacentaENSMUST00000115797
Transcript ID Bladder Breast Liver Muscle Placenta
ENSMUST00000115797 1.331±0.00 0.749±0.00 0.359±0.04 0.431±0.00 0.937±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055G CIL_00055G_0002 CGP 17:3635240-5347656
CIL_00055F CIL_00055F_0002 CGP 17:4994332-5440259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006338 IC chromatin remodeling
GO:0016514 IEA SWI/SNF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000138818 arid1b-001 protein_coding Danio_rerio 0.000000002 71
ENST00000312957 JAM2-201 protein_coding Homo_sapiens 0.00002 57
ENST00000319584 ARID1B-004 protein_coding Homo_sapiens 0 2475
ENST00000324856 ARID1A-001 protein_coding Homo_sapiens 9e-27 128
ENST00000346085 ARID1B-001 protein_coding Homo_sapiens 0 6017
ENST00000350026 ARID1B-009 protein_coding Homo_sapiens 0 5605
ENST00000379982 RHOBTB3-001 protein_coding Homo_sapiens 0.00003 57
ENST00000400532 JAM2-003 protein_coding Homo_sapiens 0.000009 57
ENST00000400790 ARID1B-006 protein_coding Homo_sapiens 0 531
ENST00000414678 ARID1B-005 protein_coding Homo_sapiens 0 6979
ENST00000452544 ARID1B-002 retained_intron Homo_sapiens 0 1210
ENST00000478761 ARID1B-003 processed_transcript Homo_sapiens 0 761
ENST00000480456 JAM2-001 protein_coding Homo_sapiens 0.00002 57
ENST00000493658 ARID1B-007 retained_intron Homo_sapiens 0 287
ENST00000494260 ARID1B-008 processed_transcript Homo_sapiens 0 195
ENST00000506817 RHOBTB3-004 protein_coding Homo_sapiens 0.000007 57

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