C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1B (SWI-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092723 Arid1b-002 ENSMUSG00000069729 10090 + 17:4994939-5343505 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092723
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092723 5.888±1.05 9.190±2.70 2.909±0.00 7.589±0.00 6.810±1.83 7.024±0.66 2.818±0.50 5.043±0.69 1.656±0.67 6.560±1.26 2.913±1.05 10.235±2.25 10.535±6.88 1.479±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055G CIL_00055G_0002 CGP 17:3635240-5347656
CIL_00055F CIL_00055F_0002 CGP 17:4994332-5440259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0006338 IC chromatin remodeling
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000138818 arid1b-001 protein_coding Danio_rerio 0.000000001 71
ENST00000312957 JAM2-201 protein_coding Homo_sapiens 0.00002 57
ENST00000319584 ARID1B-004 protein_coding Homo_sapiens 0 1735
ENST00000346085 ARID1B-001 protein_coding Homo_sapiens 0 6632
ENST00000350026 ARID1B-009 protein_coding Homo_sapiens 0 8780
ENST00000379982 RHOBTB3-001 protein_coding Homo_sapiens 0.00003 57
ENST00000400532 JAM2-003 protein_coding Homo_sapiens 0.000009 57
ENST00000400790 ARID1B-006 protein_coding Homo_sapiens 0 880
ENST00000414678 ARID1B-005 protein_coding Homo_sapiens 0 4903
ENST00000452544 ARID1B-002 retained_intron Homo_sapiens 0 1210
ENST00000478761 ARID1B-003 processed_transcript Homo_sapiens 0 259
ENST00000480456 JAM2-001 protein_coding Homo_sapiens 0.00002 57
ENST00000493658 ARID1B-007 retained_intron Homo_sapiens 0 287
ENST00000494260 ARID1B-008 processed_transcript Homo_sapiens 0 195
ENST00000506817 RHOBTB3-004 protein_coding Homo_sapiens 0.000007 57

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