C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380324 USP3-001 ENSG00000140455 9606 + 15:63504611-63591467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000380324
Transcript ID Bladder Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000380324 1.731±0.00 2.198±0.00 3.348±0.00 0.963±0.00 1.677±0.00 3.870±0.95 3.851±0.00 2.607±1.02 4.163±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000278 IMP mitotic cell cycle
GO:0000790 IDA nuclear chromatin
GO:0001046 IEA core promoter sequence-specific DNA binding
GO:0003682 IEA chromatin binding
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 TAS ubiquitin-specific protease activity
GO:0005634 IEA nucleus
GO:0006281 IMP DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016578 IDA histone deubiquitination
GO:0031647 IDA regulation of protein stability
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042393 IPI histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000127569 Usp3-001 protein_coding Mus_musculus 0 2422
ENSMUST00000174387 Usp3-011 protein_coding Mus_musculus 0 1965
ENSMUST00000139547 Usp3-003 nonsense_mediated_decay Mus_musculus 0 1882
ENSMUST00000034940 Usp3-004 retained_intron Mus_musculus 0 1753
ENSMUST00000098613 Usp3-002 protein_coding Mus_musculus 0 1432
ENSMUST00000124694 Usp3-007 processed_transcript Mus_musculus 0 562
ENSMUST00000150840 Usp3-009 retained_intron Mus_musculus 0 544
ENSMUST00000124519 Usp3-006 retained_intron Mus_musculus 0 514
ENSMUST00000154476 Usp3-008 retained_intron Mus_musculus 0 440
ENSMUST00000139952 Usp3-005 processed_transcript Mus_musculus 0 409
ENSMUST00000132255 Usp3-010 retained_intron Mus_musculus 0 390

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