C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034940 Usp3-004 ENSMUSG00000032376 10090 - 9:66517877-66592958 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMusclePlacentaTestisENSMUST00000034940
Transcript ID Bladder Brain Liver Muscle Placenta Testis
ENSMUST00000034940 3.457±0.64 5.281±0.37 1.741±0.43 0.880±0.14 3.388±0.15 2.250±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OX CIL_0004OX_0002 CGP 9:66508459-66593142

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268049 USP3-201 protein_coding Homo_sapiens 0 1583
ENST00000380324 USP3-001 protein_coding Homo_sapiens 0 1753
ENST00000538686 USP3-005 nonsense_mediated_decay Homo_sapiens 0 1304
ENST00000540797 USP3-202 protein_coding Homo_sapiens 0 1304
ENST00000557884 USP3-011 nonsense_mediated_decay Homo_sapiens 0 582
ENST00000558157 USP3-003 nonsense_mediated_decay Homo_sapiens 0 1583
ENST00000558218 USP3-017 processed_transcript Homo_sapiens 0 440
ENST00000558285 USP3-004 protein_coding Homo_sapiens 0 1583
ENST00000558925 USP3-013 retained_intron Homo_sapiens 5e-38 161
ENST00000559192 USP3-002 nonsense_mediated_decay Homo_sapiens 0 1483
ENST00000559257 USP3-008 nonsense_mediated_decay Homo_sapiens 0 1373
ENST00000559276 USP3-010 protein_coding Homo_sapiens 2e-38 163
ENST00000559711 USP3-006 protein_coding Homo_sapiens 0 1304
ENST00000559718 USP3-019 retained_intron Homo_sapiens 0 606
ENST00000559771 USP3-009 protein_coding Homo_sapiens 0 499
ENST00000559873 USP3-015 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000560070 USP3-014 protein_coding Homo_sapiens 0 350
ENST00000560202 USP3-007 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000561326 USP3-016 processed_transcript Homo_sapiens 0 503
ENST00000561381 USP3-018 retained_intron Homo_sapiens 0 529
ENST00000561442 USP3-012 protein_coding Homo_sapiens 0 311

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