C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139547 Usp3-003 ENSMUSG00000032376 10090 - 9:66516234-66593000 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139547 4.087±1.30 4.357±0.75 5.086±0.78 10.806±6.72 5.113±2.12 5.562±1.99 1.731±0.11 7.945±0.60 3.017±0.75 4.687±0.15 0.709±0.09 11.047±2.90 2.718±1.28 0.605±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OX CIL_0004OX_0002 CGP 9:66508459-66593142

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268049 USP3-201 protein_coding Homo_sapiens 0 1882
ENST00000380324 USP3-001 protein_coding Homo_sapiens 0 1882
ENST00000538686 USP3-005 nonsense_mediated_decay Homo_sapiens 0 1882
ENST00000540797 USP3-202 protein_coding Homo_sapiens 0 1882
ENST00000557884 USP3-011 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000558157 USP3-003 nonsense_mediated_decay Homo_sapiens 0 1882
ENST00000558218 USP3-017 processed_transcript Homo_sapiens 0 603
ENST00000558285 USP3-004 protein_coding Homo_sapiens 0 1674
ENST00000558925 USP3-013 retained_intron Homo_sapiens 5e-38 161
ENST00000559192 USP3-002 nonsense_mediated_decay Homo_sapiens 0 1882
ENST00000559257 USP3-008 nonsense_mediated_decay Homo_sapiens 0 1882
ENST00000559711 USP3-006 protein_coding Homo_sapiens 0 1873
ENST00000559718 USP3-019 retained_intron Homo_sapiens 0 599
ENST00000559771 USP3-009 protein_coding Homo_sapiens 0 220
ENST00000559873 USP3-015 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000560070 USP3-014 protein_coding Homo_sapiens 0 350
ENST00000560202 USP3-007 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000561326 USP3-016 processed_transcript Homo_sapiens 0 503
ENST00000561381 USP3-018 retained_intron Homo_sapiens 0 691
ENST00000561442 USP3-012 protein_coding Homo_sapiens 2.8026e-45 185

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