C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127569 Usp3-001 ENSMUSG00000032376 10090 - 9:66514637-66593142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127569 1.628±0.53 2.105±0.38 4.000±0.15 2.105±1.26 1.870±0.58 2.886±0.25 0.978±0.18 1.536±0.18 1.344±0.30 1.766±0.16 0.320±0.09 6.259±1.53 0.904±0.48 1.305±0.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OX CIL_0004OX_0002 CGP 9:66508459-66593142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000278 IEA mitotic cell cycle
GO:0000790 IEA nuclear chromatin
GO:0001046 IEA core promoter sequence-specific DNA binding
GO:0003682 IEA chromatin binding
GO:0004221 IEA ubiquitin thiolesterase activity
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0008270 IEA zinc ion binding
GO:0016578 IEA histone deubiquitination
GO:0031647 IEA regulation of protein stability
GO:0042393 IEA histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268049 USP3-201 protein_coding Homo_sapiens 0 2244
ENST00000380324 USP3-001 protein_coding Homo_sapiens 0 2422
ENST00000538686 USP3-005 nonsense_mediated_decay Homo_sapiens 0 1965
ENST00000540797 USP3-202 protein_coding Homo_sapiens 0 1965
ENST00000557884 USP3-011 nonsense_mediated_decay Homo_sapiens 0 582
ENST00000558157 USP3-003 nonsense_mediated_decay Homo_sapiens 0 2244
ENST00000558218 USP3-017 processed_transcript Homo_sapiens 0 603
ENST00000558285 USP3-004 protein_coding Homo_sapiens 0 2037
ENST00000558925 USP3-013 retained_intron Homo_sapiens 5e-38 161
ENST00000559192 USP3-002 nonsense_mediated_decay Homo_sapiens 0 2145
ENST00000559257 USP3-008 nonsense_mediated_decay Homo_sapiens 0 2034
ENST00000559276 USP3-010 protein_coding Homo_sapiens 2e-38 163
ENST00000559711 USP3-006 protein_coding Homo_sapiens 0 1956
ENST00000559718 USP3-019 retained_intron Homo_sapiens 0 599
ENST00000559771 USP3-009 protein_coding Homo_sapiens 0 499
ENST00000559873 USP3-015 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000560070 USP3-014 protein_coding Homo_sapiens 0 350
ENST00000560202 USP3-007 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000561326 USP3-016 processed_transcript Homo_sapiens 0 503
ENST00000561381 USP3-018 retained_intron Homo_sapiens 0 691
ENST00000561442 USP3-012 protein_coding Homo_sapiens 0 311

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