C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mesoderm induction early response 1, family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381226 MIER3-003 ENSG00000155545 9606 - 5:56919602-56952118 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000381226
Transcript ID Placenta
ENST00000381226 0.346±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089D CIL_00089D_0001 VISTA 5:56348801-56951831
CIL_0007FY CIL_0007FY_0002 CGP 5:56909260-56971675

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109272 Mier3-001 protein_coding Mus_musculus 0 2695
ENSMUST00000109271 Mier3-004 protein_coding Mus_musculus 0 2665
ENSMUST00000047412 Mier3-002 protein_coding Mus_musculus 0 2665
ENSMUST00000137268 Mier3-005 nonsense_mediated_decay Mus_musculus 0 2531
ENSMUST00000191295 RP23-183P22.5-001 processed_pseudogene Mus_musculus 0 1687
ENSMUST00000146726 Mier3-003 retained_intron Mus_musculus 0 195

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