C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00089D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm45 VISTA 9606 5:56348801-56951831
GeneTranscriptPositionBiotype
ENSG00000095015 (MAP3K1)
mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase 		ENST00000399503 (MAP3K1-001) 56815574-56896152 protein_coding
ENST00000469188 (MAP3K1-002) 56885953-56896152 retained_intron
ENSG00000155542 (SETD9)
SET domain containing 9 		ENST00000285947 (SETD9-001) 56909260-56917235 protein_coding
ENST00000418299 (SETD9-002) 56909615-56917348 nonsense_mediated_decay
ENST00000423328 (SETD9-006) 56910105-56911295 protein_coding
ENST00000463805 (SETD9-004) 56910060-56916919 processed_transcript
ENST00000472636 (SETD9-005) 56910087-56913977 processed_transcript
ENST00000475908 (SETD9-003) 56909260-56916944 processed_transcript
ENST00000477359 (SETD9-009) 56910777-56913982 processed_transcript
ENST00000480414 (SETD9-008) 56909624-56913116 processed_transcript
ENST00000498322 (SETD9-010) 56909593-56911588 processed_transcript
ENST00000624733 (SETD9-007) 56910912-56911295 TEC
ENSG00000225230 (AC008937.3)
 ENST00000453721 (AC008937.3-001) 56900041-56910714 antisense
ENSG00000225940 (AC022431.2)
uncharacterized protein LOC101928448 		ENST00000438651 (AC022431.2-001) 56511567-56606232 protein_coding
ENST00000611197 (AC022431.2-201) 56511722-56535230 protein_coding
ENSG00000226221 (AC022431.1)
 ENST00000450941 (AC022431.1-001) 56504635-56505072 processed_pseudogene
ENSG00000228650 (AC008940.1)
 ENST00000438117 (AC008940.1-001) 56770799-56772303 lincRNA
ENSG00000234553 (AC022431.3)
 ENST00000431789 (AC022431.3-001) 56536583-56537826 sense_intronic
ENSG00000248727 (CTC-236F12.4)
 ENST00000506836 (CTC-236F12.4-002) 56457795-56481769 lincRNA
ENST00000511661 (CTC-236F12.4-001) 56465010-56481946 lincRNA
ENSG00000250787 (HMGN1P17)
high mobility group nucleosome binding domain 1 pseudogene 17 		ENST00000513734 (HMGN1P17-001) 56381781-56382075 processed_pseudogene
ENSG00000265665 (AC008391.1)
 ENST00000577951 (AC008391.1-201) 56457038-56457138 miRNA
ENSG00000271828 (CTD-2310F14.1)
 ENST00000606813 (CTD-2310F14.1-001) 56927874-56929573 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00089D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm45 VISTA 10090 13:111652900-112255571
GeneTranscriptPositionBiotype
ENSMUSG00000021754 (Map3k1)
mitogen-activated protein kinase kinase kinase 1 		ENSMUST00000109267 (Map3k1-001) 111746428-111808993 protein_coding
ENSMUST00000130594 (Map3k1-004) 111753568-111754704 retained_intron
ENSMUST00000133364 (Map3k1-003) 111767609-111768553 processed_transcript
ENSMUST00000145055 (Map3k1-002) 111767984-111808315 protein_coding
ENSMUST00000175936 (Map3k1-005) 111748793-111751373 retained_intron
ENSMUSG00000032727 (Mier3)
mesoderm induction early response 1, family member 3 		ENSMUST00000047412 (Mier3-002) 111686351-111717636 protein_coding
ENSMUST00000109271 (Mier3-004) 111686351-111717636 protein_coding
ENSMUST00000109272 (Mier3-001) 111686178-111718596 protein_coding
ENSMUST00000137268 (Mier3-005) 111686326-111718593 nonsense_mediated_decay
ENSMUST00000146726 (Mier3-003) 111686325-111691811 retained_intron
ENSMUSG00000082433 (Gm9025)
predicted gene 9025 		ENSMUST00000122415 (Gm9025-001) 111882393-111884177 processed_pseudogene
ENSMUSG00000084217 (Gm15488)
predicted gene 15488 		ENSMUST00000121682 (Gm15488-001) 111721479-111724334 unitary_pseudogene
ENSMUSG00000085204 (Gm15327)
predicted gene 15327 		ENSMUST00000149252 (Gm15327-001) 111809141-111810923 processed_transcript
ENSMUST00000153958 (Gm15327-002) 111810468-111811039 processed_transcript
ENSMUSG00000086057 (Gm15324)
predicted gene 15324 		ENSMUST00000139397 (Gm15324-001) 111856996-111858505 lincRNA
ENSMUSG00000086092 (Gm15323)
predicted gene 15323 		ENSMUST00000156109 (Gm15323-001) 112005502-112017332 lincRNA
ENSMUSG00000086111 (Gm15326)
predicted gene 15326 		ENSMUST00000127817 (Gm15326-002) 111871140-111874730 lincRNA
ENSMUST00000128198 (Gm15326-001) 111867936-111871937 lincRNA
ENSMUSG00000086402 (Gm15322)
predicted gene 15322 		ENSMUST00000142621 (Gm15322-001) 111991466-111995486 lincRNA
ENSMUSG00000086480 (Gm15287)
predicted gene 15287 		ENSMUST00000132564 (Gm15287-001) 111725517-111735124 antisense
ENSMUSG00000086861 (Gm15325)
predicted gene 15325 		ENSMUST00000149661 (Gm15325-001) 111850316-111852622 lincRNA

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00089D_0001ENSG00000095015ENST00000399503ENST00000469188ENSG00000155542ENST00000285947ENST00000418299ENST00000423328ENST00000463805ENST00000472636ENST00000475908ENST00000477359ENST00000480414ENST00000498322ENST00000624733ENSG00000225230ENST00000453721ENSG00000225940ENST00000438651ENST00000611197ENSG00000226221ENST00000450941ENSG00000228650ENST00000438117ENSG00000234553ENST00000431789ENSG00000248727ENST00000506836ENST00000511661ENSG00000250787ENST00000513734ENSG00000265665ENST00000577951ENSG00000271828ENST00000606813CIL_00089D_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00089D_0001ENSG00000095015ENST00000399503ENST00000469188ENSG00000155542ENST00000285947ENST00000418299ENST00000463805ENST00000475908ENST00000480414ENST00000498322ENSG00000225230ENST00000453721ENSG00000225940ENST00000438651ENST00000611197ENSG00000226221ENST00000450941ENSG00000228650ENST00000438117ENSG00000234553ENST00000431789ENSG00000248727ENST00000506836ENST00000511661ENSG00000250787ENST00000513734ENSG00000265665ENST00000577951ENSG00000271828ENST00000606813CIL_00089D_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000095015 ENST00000399503 2.626±0.00 5.418±0.00 2.902±0.00 0.964±0.06 3.043±0.93 2.069±0.71 1.208±0.19 3.242±0.00 2.395±1.63 3.416±0.40 0.580±0.32 2.346±1.34 3.280±1.19 4.581±0.86
ENST00000469188 N/A 1.588±0.00 N/A N/A N/A N/A N/A 1.881±0.00 N/A 0.548±0.00 N/A 1.260±0.00 N/A 0.935±0.00
ENSG00000155542 ENST00000285947 0.609±0.00 0.213±0.00 N/A 0.671±0.00 0.811±0.65 0.476±0.04 1.098±0.00 0.632±0.00 0.462±0.00 N/A 0.213±0.00 0.833±0.38 0.484±0.33 4.069±0.41
ENST00000418299 1.214±0.00 0.251±0.00 1.209±0.00 0.524±0.15 N/A 1.366±0.00 1.064±0.04 1.275±0.03 0.582±0.09 0.429±0.00 N/A 0.432±0.00 0.482±0.06 2.103±0.00
ENST00000423328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463805 N/A N/A N/A 0.902±0.47 N/A N/A 0.619±0.00 N/A 0.495±0.00 N/A 0.707±0.00 N/A 0.622±0.00 3.856±0.52
ENST00000472636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475908 2.348±0.00 0.596±0.00 N/A 0.990±0.00 1.418±0.77 1.911±0.00 3.848±0.00 1.749±0.00 2.305±0.00 1.726±1.19 1.009±0.00 0.925±0.26 0.572±0.30 10.576±0.00
ENST00000477359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480414 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.853±0.00 0.332±0.00 0.689±0.00 0.504±0.00 N/A
ENST00000498322 N/A N/A N/A N/A N/A 0.999±0.00 N/A N/A 0.219±0.00 N/A N/A N/A N/A N/A
ENST00000624733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225230 ENST00000453721 N/A N/A N/A N/A 0.390±0.00 N/A N/A N/A N/A N/A N/A 0.385±0.00 N/A N/A
ENSG00000225940 ENST00000438651 N/A 0.162±0.00 0.316±0.00 N/A N/A N/A N/A 0.066±0.00 N/A 0.038±0.00 N/A 0.039±0.01 N/A 0.242±0.16
ENST00000611197 N/A N/A N/A N/A N/A 0.280±0.00 N/A 1.298±0.00 N/A N/A N/A 0.171±0.00 0.189±0.00 N/A
ENSG00000226221 ENST00000450941 0.032±0.00 0.034±0.00 N/A N/A 0.201±0.10 0.267±0.00 0.090±0.00 N/A 0.030±0.00 0.129±0.03 0.147±0.00 0.282±0.19 0.229±0.00 0.030±0.00
ENSG00000228650 ENST00000438117 N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234553 ENST00000431789 0.028±0.00 0.170±0.00 N/A 0.090±0.00 0.084±0.00 0.159±0.00 0.241±0.00 0.456±0.00 0.074±0.00 0.073±0.00 N/A 0.080±0.00 N/A 0.143±0.07
ENSG00000248727 ENST00000506836 0.069±0.00 0.408±0.00 N/A N/A 0.196±0.00 N/A N/A 0.454±0.00 N/A 0.433±0.00 N/A N/A 0.073±0.00 0.169±0.09
ENST00000511661 N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A 0.179±0.00 N/A 0.042±0.00
ENSG00000250787 ENST00000513734 N/A N/A N/A N/A N/A 0.049±0.00 N/A 0.485±0.00 N/A N/A N/A 0.133±0.00 0.189±0.00 0.366±0.27
ENSG00000265665 ENST00000577951 N/A 3.193±0.00 N/A 1.066±0.00 3.137±0.00 0.928±0.00 0.619±0.00 N/A 0.631±0.00 1.065±0.00 0.612±0.00 N/A N/A 1.218±0.05
ENSG00000271828 ENST00000606813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.209±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021754 ENSMUST00000109267 2.371±0.93 4.573±0.81 1.052±0.27 0.922±0.19 7.176±4.60 3.831±0.71 1.415±0.68 2.793±1.55 0.680±0.40 4.220±1.25 0.395±0.02 5.764±1.15 1.603±0.39 0.670±0.54
ENSMUST00000130594 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032727 ENSMUST00000047412 N/A 1.192±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.498±0.42 N/A N/A
ENSMUST00000109271 1.708±0.26 3.368±1.06 N/A 1.770±0.00 2.689±1.13 3.767±1.54 0.390±0.07 0.917±0.33 0.744±0.25 1.198±0.03 N/A 3.414±1.48 2.823±0.43 3.160±0.48
ENSMUST00000109272 2.866±1.23 0.918±0.10 5.096±0.11 3.303±1.93 1.659±0.61 3.751±0.40 1.388±0.51 3.212±0.21 5.049±3.44 1.906±0.26 0.982±0.31 2.171±1.30 3.335±2.23 11.804±1.91
ENSMUST00000137268 N/A 2.418±0.00 N/A N/A 1.307±0.00 3.751±1.61 N/A N/A 1.634±0.79 1.896±0.62 0.986±0.00 3.518±0.07 N/A N/A
ENSMUST00000146726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.293±0.00
ENSMUSG00000082433 ENSMUST00000122415 0.070±0.02 N/A 0.025±0.00 0.005±0.00 0.130±0.08 0.077±0.01 0.028±0.01 0.059±0.02 0.010±0.00 0.032±0.01 N/A 0.083±0.05 0.043±0.03 0.034±0.01
ENSMUSG00000084217 ENSMUST00000121682 N/A N/A 0.015±0.00 0.016±0.00 N/A N/A N/A 0.196±0.00 0.040±0.02 N/A N/A 0.052±0.00 0.090±0.05 0.082±0.00
ENSMUSG00000085204 ENSMUST00000149252 0.657±0.00 N/A 0.801±0.00 N/A N/A 0.802±0.00 0.354±0.00 1.102±0.08 0.178±0.08 0.386±0.07 N/A 0.760±0.48 N/A 0.159±0.00
ENSMUST00000153958 N/A N/A 0.580±0.00 0.082±0.00 0.249±0.00 N/A N/A 0.511±0.07 0.208±0.04 N/A 0.101±0.06 0.404±0.08 0.258±0.00 0.189±0.00
ENSMUSG00000086057 ENSMUST00000139397 N/A N/A N/A N/A N/A 0.304±0.00 N/A N/A 0.054±0.01 N/A N/A N/A N/A N/A
ENSMUSG00000086092 ENSMUST00000156109 N/A N/A 0.029±0.00 N/A N/A N/A 0.115±0.00 N/A 0.022±0.00 N/A 0.076±0.00 N/A N/A 0.297±0.13
ENSMUSG00000086111 ENSMUST00000127817 0.452±0.00 0.384±0.00 N/A 0.122±0.00 0.833±0.33 N/A 0.322±0.13 N/A N/A 0.288±0.00 N/A N/A N/A N/A
ENSMUST00000128198 0.238±0.16 0.079±0.00 0.190±0.03 0.042±0.00 0.304±0.11 0.102±0.03 0.049±0.02 0.107±0.06 0.080±0.03 0.140±0.08 0.043±0.01 0.274±0.14 0.173±0.14 0.091±0.06
ENSMUSG00000086402 ENSMUST00000142621 N/A N/A N/A N/A N/A N/A 0.078±0.03 N/A N/A N/A 0.084±0.00 N/A N/A 0.130±0.07
ENSMUSG00000086480 ENSMUST00000132564 0.503±0.12 0.200±0.03 0.426±0.05 0.356±0.15 0.178±0.05 0.173±0.09 0.275±0.19 0.152±0.10 0.407±0.23 0.709±0.21 0.089±0.01 0.516±0.21 0.315±0.16 0.998±0.50
ENSMUSG00000086861 ENSMUST00000149661 0.097±0.00 N/A N/A N/A N/A 0.127±0.03 N/A N/A N/A 0.073±0.00 N/A 0.139±0.00 N/A 0.079±0.03

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