C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group 20A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381714 HMG20A-002 ENSG00000140382 9606 + 15:77420674-77485603 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENST00000381714
Transcript ID Ovary Testis
ENST00000381714 1.215±0.00 2.773±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UO CIL_0001UO_0001 CGP 15:77100656-77485607
CIL_0003SZ CIL_0003SZ_0001 CGP 15:77420412-77820900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 NAS DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0006325 NAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0045665 IEA negative regulation of neuron differentiation
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034879 Hmg20a-201 protein_coding Mus_musculus 0 1805

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