C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382671 PSMD13-002 ENSG00000185627 9606 + 11:237038-252981 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382671
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382671 27.420±0.00 51.889±0.00 4.096±0.00 32.782±0.00 9.814±0.00 7.752±5.86 14.726±9.34 11.221±8.06 21.041±0.00 14.681±9.47 22.778±12.84 46.875±14.71 20.759±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LA CIL_0006LA_0001 CGP 11:207511-236931
CIL_0006QN CIL_0006QN_0001 CGP 11:215458-252984

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166889 Psmd13-010 nonsense_mediated_decay Mus_musculus 0 1415
ENSMUST00000026560 Psmd13-001 protein_coding Mus_musculus 0 1203
ENSMUST00000151644 Psmd13-002 retained_intron Mus_musculus 0 924
ENSMUST00000163610 Psmd13-011 protein_coding Mus_musculus 0 809
ENSMUST00000130462 Psmd13-009 protein_coding Mus_musculus 0 680
ENSMUST00000164681 Psmd13-013 protein_coding Mus_musculus 0 496
ENSMUST00000129683 Psmd13-005 processed_transcript Mus_musculus 0 496
ENSMUST00000125668 Psmd13-008 retained_intron Mus_musculus 0 326
ENSMUST00000140411 Psmd13-003 processed_transcript Mus_musculus 0 246
ENSMUST00000165539 Psmd13-012 protein_coding Mus_musculus 0 226
ENSMUST00000146875 Psmd13-006 retained_intron Mus_musculus 0 226
ENSMUST00000124736 Psmd13-004 processed_transcript Mus_musculus 0 226
ENSMUST00000153385 Psmd13-007 processed_transcript Mus_musculus 4e-28 130

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