C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5-hydroxymethylcytosine (hmC) binding, ES cell-specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000383463 HMCES-001 ENSG00000183624 9606 + 3:129278840-129306186 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000383463
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000383463 9.252±0.00 14.253±0.00 11.382±0.00 3.318±2.05 2.395±1.04 4.287±0.00 1.138±0.33 4.325±0.00 5.450±3.36 7.323±3.14 4.068±0.06 9.340±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030Z CIL_00030Z_0001 CGP 3:129249606-129306186
CIL_000310 CIL_000310_0001 CGP 3:129278828-129316277

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0006508 IEA proteolysis
GO:0008233 IEA peptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113606 Hmces-002 protein_coding Mus_musculus 0 1081
ENSMUST00000032141 Hmces-001 protein_coding Mus_musculus 0 1081
ENSMUST00000124551 Hmces-004 processed_transcript Mus_musculus 0 433

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