C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 4 open reading frame 29
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000388795 C4orf29-002 ENSG00000164074 9606 + 4:127965411-128039711 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyMuscleENST00000388795
Transcript ID Brain Breast Heart Kidney Muscle
ENST00000388795 0.461±0.00 1.009±0.00 1.521±0.66 1.505±0.00 0.631±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AK CIL_0007AK_0001 CGP 4:127880861-127965995
CIL_00001O CIL_00001O_0001 CGP 4:127917805-128039711

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108078 3110057O12Rik-202 protein_coding Mus_musculus 0 1373
ENSMUST00000108077 3110057O12Rik-201 protein_coding Mus_musculus 0 1373
ENSMUST00000159774 3110057O12Rik-001 protein_coding Mus_musculus 0 1373
ENSMUST00000161111 3110057O12Rik-003 nonsense_mediated_decay Mus_musculus 0 1166
ENSMUST00000159057 3110057O12Rik-004 processed_transcript Mus_musculus 0 830
ENSMUST00000159227 3110057O12Rik-002 nonsense_mediated_decay Mus_musculus 0 824
ENSMUST00000159274 3110057O12Rik-005 protein_coding Mus_musculus 0 414
ENSMUST00000159421 3110057O12Rik-006 protein_coding Mus_musculus 0 267
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0000006 62
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000008 58

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