C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 53 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389040 VPS53-004 ENSG00000141252 9606 - 17:532827-714709 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartOvaryENST00000389040
Transcript ID Adipose Brain Breast Colon Heart Ovary
ENST00000389040 6.212±0.00 2.991±0.00 6.459±0.00 3.304±0.00 2.509±0.00 1.770±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AN CIL_0006AN_0002 CGP 17:439978-721717

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166752 Vps53-015 nonsense_mediated_decay Mus_musculus 0 2446
ENSMUST00000094015 Vps53-013 protein_coding Mus_musculus 0 1149
ENSMUST00000056601 Vps53-001 protein_coding Mus_musculus 0 1149
ENSMUST00000169734 Vps53-012 nonsense_mediated_decay Mus_musculus 0 1122
ENSMUST00000170143 Vps53-008 retained_intron Mus_musculus 0 907
ENSMUST00000108419 Vps53-014 protein_coding Mus_musculus 0 904
ENSMUST00000167114 Vps53-016 protein_coding Mus_musculus 0 804
ENSMUST00000166084 Vps53-011 processed_transcript Mus_musculus 0 704
ENSMUST00000143163 Vps53-006 retained_intron Mus_musculus 0 676
ENSMUST00000166436 Vps53-009 protein_coding Mus_musculus 0 627
ENSMUST00000141773 Vps53-004 processed_transcript Mus_musculus 0 462
ENSMUST00000143459 Vps53-005 processed_transcript Mus_musculus 0 392
ENSMUST00000163878 Vps53-010 nonsense_mediated_decay Mus_musculus 0 257

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