C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, alpha D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389202 ITGAD-001 ENSG00000156886 9606 + 16:31393312-31426505 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000389202
Transcript ID Adrenal Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000389202 0.989±0.00 0.011±0.00 0.029±0.00 0.015±0.00 0.036±0.00 0.106±0.00 0.201±0.00 0.235±0.18 0.410±0.16 0.026±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035N CIL_00035N_0001 CGP 16:31355134-31426505
CIL_000436 CIL_000436_0001 CGP 16:31393312-31428428

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 TAS plasma membrane
GO:0006955 NAS immune response
GO:0007229 IEA integrin-mediated signaling pathway
GO:0008305 TAS integrin complex
GO:0009986 IC cell surface
GO:0030198 TAS extracellular matrix organization
GO:0034113 IMP heterotypic cell-cell adhesion
GO:0046872 IEA metal ion binding
GO:0050798 IEA activated T cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177111 Itgad-003 protein_coding Mus_musculus 0 2549
ENSMUST00000106237 Itgad-002 protein_coding Mus_musculus 0 2549
ENSMUST00000033051 Itgad-001 protein_coding Mus_musculus 0 2063
ENSMUST00000033053 Itgax-201 protein_coding Mus_musculus 0 713

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