C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5-hydroxymethylcytosine (hmC) binding, ES cell-specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389735 HMCES-002 ENSG00000183624 9606 + 3:129278974-129305262 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389735
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389735 10.883±0.00 11.692±0.00 8.978±0.00 19.857±0.00 12.594±0.00 9.892±0.00 7.254±4.91 7.522±0.00 8.862±8.20 5.318±2.57 7.053±3.71 6.733±2.41 16.141±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030Z CIL_00030Z_0001 CGP 3:129249606-129306186
CIL_000310 CIL_000310_0001 CGP 3:129278828-129316277

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0006508 IEA proteolysis
GO:0008233 IEA peptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113606 Hmces-002 protein_coding Mus_musculus 0 1081
ENSMUST00000032141 Hmces-001 protein_coding Mus_musculus 0 1081
ENSMUST00000124551 Hmces-004 processed_transcript Mus_musculus 0 433

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