C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 216
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389900 RNF216-004 ENSG00000011275 9606 - 7:5622695-5761138 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverLungMuscleOvaryENST00000389900
Transcript ID Bladder Brain Breast Heart Liver Lung Muscle Ovary
ENST00000389900 0.810±0.00 2.188±0.00 2.952±0.00 0.996±0.00 2.824±0.00 3.220±0.00 1.778±0.00 1.810±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0001 VISTA 7:5332287-5936913
CIL_00027J CIL_00027J_0002 CGP 7:5592823-5781739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053498 Rnf216-201 protein_coding Mus_musculus 0 2176
ENSDART00000130058 rnf216-201 protein_coding Danio_rerio 0 270
ENSDART00000138783 rnf216-001 protein_coding Danio_rerio 0 270

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