C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 216
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053498 Rnf216-201 ENSMUSG00000045078 10090 - 5:142990893-143113020 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053498 8.764±3.57 11.516±7.18 3.476±0.11 4.414±1.88 7.672±4.32 8.072±4.27 4.469±2.62 9.036±2.68 4.858±1.58 11.654±4.69 1.051±0.27 12.844±8.19 6.897±4.09 13.201±9.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_00027J CIL_00027J_0003 CGP 5:142960343-143113020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0032648 ISS regulation of interferon-beta production
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050691 ISS regulation of defense response to virus by host
GO:0070936 ISS protein K48-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130058 rnf216-201 protein_coding Danio_rerio 0 283
ENSDART00000138783 rnf216-001 protein_coding Danio_rerio 0 283
ENST00000389900 RNF216-004 nonsense_mediated_decay Homo_sapiens 0 2176
ENST00000389902 RNF216-003 protein_coding Homo_sapiens 0 2649
ENST00000403969 RNF216P1-005 processed_transcript Homo_sapiens 0 337
ENST00000404006 RNF216P1-003 processed_transcript Homo_sapiens 0 488
ENST00000404404 RNF216P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 340
ENST00000405396 RNF216P1-011 processed_transcript Homo_sapiens 0 291
ENST00000406089 RNF216P1-014 processed_transcript Homo_sapiens 0 340
ENST00000406608 RNF216P1-012 processed_transcript Homo_sapiens 0 302
ENST00000407184 RBAK-RBAKDN-001 protein_coding Homo_sapiens 0 257
ENST00000411812 RNF216-006 nonsense_mediated_decay Homo_sapiens 1e-34 150
ENST00000425013 RNF216-001 protein_coding Homo_sapiens 0 2649
ENST00000429902 RNF216P1-008 processed_transcript Homo_sapiens 0 335
ENST00000464479 RNF216P1-010 processed_transcript Homo_sapiens 0 228
ENST00000466622 RNF216P1-013 processed_transcript Homo_sapiens 0 379
ENST00000469375 RNF216-010 processed_transcript Homo_sapiens 0 662
ENST00000479541 RNF216-008 retained_intron Homo_sapiens 0 220
ENST00000484458 RNF216-009 processed_transcript Homo_sapiens 0 440
ENST00000493407 RNF216P1-009 processed_transcript Homo_sapiens 0 337
ENST00000494947 RNF216P1-006 processed_transcript Homo_sapiens 0 335

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