C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00027J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000059680-ENSDARG00000087893 CGP 7955 3:40571229-40659650
GeneTranscriptPositionBiotype
ENSDARG00000059680 (fscn1a)
fascin homolog 1, actin-bundling protein a (Strongylocentrotus purpuratus) 		ENSDART00000083212 (fscn1a-001) 40571229-40584271 protein_coding
ENSDARG00000087893 (rnf216)
ring finger protein 216 		ENSDART00000130058 (rnf216-201) 40599909-40653602 protein_coding
ENSDART00000138783 (rnf216-001) 40599901-40659650 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00027J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000075618-ENSG00000011275 CGP 9606 7:5592823-5781739
GeneTranscriptPositionBiotype
ENSG00000011275 (RNF216)
ring finger protein 216 		ENST00000389900 (RNF216-004) 5622695-5761138 nonsense_mediated_decay
ENST00000389902 (RNF216-003) 5622607-5781739 protein_coding
ENST00000411812 (RNF216-006) 5741579-5781646 nonsense_mediated_decay
ENST00000416985 (RNF216-005) 5761011-5781620 protein_coding
ENST00000425013 (RNF216-001) 5620047-5781696 protein_coding
ENST00000469375 (RNF216-010) 5622927-5650015 processed_transcript
ENST00000476345 (RNF216-007) 5761088-5780292 processed_transcript
ENST00000479541 (RNF216-008) 5729530-5739492 retained_intron
ENST00000484458 (RNF216-009) 5641348-5713441 processed_transcript
ENSG00000075618 (FSCN1)
fascin actin-bundling protein 1 		ENST00000382361 (FSCN1-001) 5592823-5606655 protein_coding
ENST00000405801 (FSCN1-005) 5594686-5603998 protein_coding
ENST00000444748 (FSCN1-003) 5593848-5603983 protein_coding
ENST00000447103 (FSCN1-004) 5594547-5603946 protein_coding
ENST00000473330 (FSCN1-002) 5602872-5606654 retained_intron
ENSG00000237738 (RNF216-IT1)
RNF216 intronic transcript 1 (non-protein coding) 		ENST00000443837 (RNF216-IT1-001) 5662432-5680461 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_00027J_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029581-ENSMUSG00000045078 CGP 10090 5:142960343-143113020
GeneTranscriptPositionBiotype
ENSMUSG00000029581 (Fscn1)
fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus) 		ENSMUST00000031565 (Fscn1-001) 142960343-142973185 protein_coding
ENSMUST00000129306 (Fscn1-002) 142960843-142972170 protein_coding
ENSMUST00000135293 (Fscn1-006) 142970085-142971989 retained_intron
ENSMUST00000137552 (Fscn1-005) 142963250-142971953 protein_coding
ENSMUST00000139131 (Fscn1-004) 142964533-142970674 protein_coding
ENSMUST00000150622 (Fscn1-003) 142962953-142970552 protein_coding
ENSMUSG00000045078 (Rnf216)
ring finger protein 216 		ENSMUST00000053498 (Rnf216-201) 142990893-143113020 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00027J_0001ENSDARG00000059680ENSDART00000083212ENSDARG00000087893ENSDART00000130058ENSDART00000138783CIL_00027J_0002ENSG00000011275ENST00000389900ENST00000389902ENST00000411812ENST00000416985ENST00000425013ENST00000469375ENST00000476345ENST00000479541ENST00000484458ENSG00000075618ENST00000382361ENST00000405801ENST00000444748ENST00000447103ENST00000473330ENSG00000237738ENST00000443837CIL_00027J_0003ENSMUSG00000029581ENSMUST00000031565ENSMUST00000129306ENSMUST00000135293ENSMUST00000137552ENSMUST00000139131ENSMUST00000150622ENSMUSG00000045078ENSMUST00000053498
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00027J_0001ENSDARG00000059680ENSDART00000083212ENSDARG00000087893ENSDART00000130058ENSDART00000138783CIL_00027J_0002ENSG00000011275ENST00000389900ENST00000389902ENST00000425013ENST00000484458ENSG00000075618ENST00000382361ENST00000405801ENST00000447103ENST00000473330ENSG00000237738ENST00000443837CIL_00027J_0003ENSMUSG00000029581ENSMUST00000031565ENSMUST00000129306ENSMUST00000135293ENSMUST00000139131ENSMUST00000150622ENSMUSG00000045078ENSMUST00000053498
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000059680 ENSDART00000083212 N/A N/A N/A 59.839±5.05 N/A N/A 7.047±0.81 11.855±0.49 0.671±0.00 N/A 5.585±0.00 N/A N/A N/A
ENSDARG00000087893 ENSDART00000130058 N/A N/A N/A 1.599±0.12 N/A N/A 5.256±1.93 8.441±1.79 N/A N/A N/A N/A N/A N/A
ENSDART00000138783 N/A N/A N/A 3.848±0.01 N/A N/A 4.605±2.90 11.885±0.00 2.522±0.00 N/A 3.208±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000011275 ENST00000389900 N/A N/A 0.810±0.00 2.188±0.00 2.952±0.00 N/A 0.996±0.00 N/A 2.824±0.00 3.220±0.00 1.778±0.00 1.810±0.00 N/A N/A
ENST00000389902 N/A N/A 2.245±0.00 2.117±0.00 3.925±0.00 3.095±0.00 0.869±0.00 2.022±0.46 4.166±0.00 3.038±1.07 2.235±0.00 5.516±0.00 1.843±0.68 7.611±1.32
ENST00000411812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425013 5.633±0.00 5.001±0.00 0.742±0.00 2.038±0.35 2.029±0.81 3.679±2.50 3.277±2.62 1.844±0.89 2.333±0.00 1.097±0.33 2.770±0.85 5.877±5.05 3.707±1.19 10.944±0.37
ENST00000469375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.736±0.00 36.753±0.00 173.398±0.00
ENSG00000075618 ENST00000382361 27.833±0.00 36.026±0.00 0.564±0.00 33.331±23.09 15.129±13.23 2.922±2.28 2.391±2.19 6.151±2.99 3.894±2.27 16.948±15.14 0.649±0.50 122.022±104.22 100.865±11.55 42.976±20.25
ENST00000405801 N/A N/A 1.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447103 N/A N/A N/A N/A N/A 0.566±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.274±0.00 2.336±0.00 N/A N/A
ENSG00000237738 ENST00000443837 0.288±0.00 0.684±0.00 N/A N/A 0.130±0.00 0.299±0.00 0.339±0.00 0.765±0.00 0.278±0.00 0.307±0.00 N/A N/A N/A 0.161±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029581 ENSMUST00000031565 46.051±4.44 35.226±4.26 33.424±2.27 167.319±84.32 95.986±30.15 9.485±0.93 12.094±1.67 9.077±0.94 8.697±8.83 9.146±1.34 2.751±1.39 88.217±34.87 81.661±34.20 1.804±1.31
ENSMUST00000129306 27.502±3.64 N/A N/A N/A 6.518±0.00 N/A 7.817±0.45 4.570±0.42 N/A N/A 1.972±0.00 33.137±11.47 99.574±49.44 3.136±0.21
ENSMUST00000135293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 122.839±0.00 84.851±0.00 2.796±0.00
ENSMUST00000137552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.418±0.34
ENSMUST00000150622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.307±0.00
ENSMUSG00000045078 ENSMUST00000053498 8.764±3.57 11.516±7.18 3.476±0.11 4.414±1.88 7.672±4.32 8.072±4.27 4.469±2.62 9.036±2.68 4.858±1.58 11.654±4.69 1.051±0.27 12.844±8.19 6.897±4.09 13.201±9.97

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