C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA synthetase long-chain family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392066 ACSL3-002 ENSG00000123983 9606 + 2:222860942-222942222 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392066
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392066 6.131±0.00 3.977±0.00 4.708±0.00 9.354±0.09 6.659±1.68 3.713±0.00 5.100±0.00 9.196±0.24 5.697±4.09 9.233±0.54 2.775±0.22 8.825±4.42 12.325±1.91 9.698±1.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XK CIL_0006XK_0001 CGP 2:222671738-222944639
CIL_00041H CIL_00041H_0002 CGP 2:222860934-223198399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004467 IMP long-chain fatty acid-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005741 IEA mitochondrial outer membrane
GO:0005777 IEA peroxisome
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005811 IDA lipid particle
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0019901 IPI protein kinase binding
GO:0019904 IPI protein domain specific binding
GO:0034379 IMP very-low-density lipoprotein particle assembly
GO:0042998 IMP positive regulation of Golgi to plasma membrane protein transport
GO:0044539 IDA long-chain fatty acid import
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051047 IMP positive regulation of secretion
GO:2001247 IMP positive regulation of phosphatidylcholine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035779 Acsl3-001 protein_coding Mus_musculus 0 3362
ENSMUST00000142704 Acsl3-003 protein_coding Mus_musculus 0 3338
ENSMUST00000134566 Acsl3-002 protein_coding Mus_musculus 0 2743
ENSMUST00000154777 Acsl3-005 retained_intron Mus_musculus 0 896
ENSMUST00000132997 Acsl3-006 retained_intron Mus_musculus 0 632
ENSMUST00000135642 Acsl3-004 protein_coding Mus_musculus 0 551
ENSMUST00000148608 Acsl3-007 retained_intron Mus_musculus 0 516
ENSDART00000006489 acsl4a-001 protein_coding Danio_rerio 0 226

Loading