C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and senescent cell antigen-like domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020077 Lims1-002 ENSMUSG00000019920 10090 + 10:58394373-58421783 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0002 VISTA 10:58082278-58683620
CIL_00010T CIL_00010T_0002 CGP 10:58255497-58424691
CIL_00010W CIL_00010W_0002 CGP 10:58323466-58494155

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005911 IEA cell-cell junction
GO:0005925 IDA focal adhesion
GO:0007160 IMP cell-matrix adhesion
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0008270 IEA zinc ion binding
GO:0010628 IEA positive regulation of gene expression
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0016337 IMP single organismal cell-cell adhesion
GO:0019901 IEA protein kinase binding
GO:0043009 IMP chordate embryonic development
GO:0043066 IGI negative regulation of apoptotic process
GO:0043234 IEA protein complex
GO:0043547 IEA positive regulation of GTPase activity
GO:0045184 IEA establishment of protein localization
GO:0045216 IGI cell-cell junction organization
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050680 IGI negative regulation of epithelial cell proliferation
GO:0051291 IEA protein heterooligomerization
GO:0051894 IEA positive regulation of focal adhesion assembly
GO:0071560 IEA cellular response to transforming growth factor beta stimulus
GO:1900026 IEA positive regulation of substrate adhesion-dependent cell spreading
GO:2000178 IGI negative regulation of neural precursor cell proliferation
GO:2000346 IGI negative regulation of hepatocyte proliferation
GO:2001046 IGI positive regulation of integrin-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000033980 lims1-201 protein_coding Danio_rerio 0 725
ENST00000324938 LIMS2-005 protein_coding Homo_sapiens 0 569
ENST00000332345 LIMS1-002 protein_coding Homo_sapiens 0 1160
ENST00000338045 LIMS1-014 protein_coding Homo_sapiens 0 1362
ENST00000355119 LIMS2-001 protein_coding Homo_sapiens 0 569
ENST00000393310 LIMS1-001 protein_coding Homo_sapiens 0 1160
ENST00000409254 LIMS2-012 protein_coding Homo_sapiens 0 370
ENST00000409286 LIMS2-009 protein_coding Homo_sapiens 0 374
ENST00000409441 LIMS1-003 protein_coding Homo_sapiens 0 1160
ENST00000409455 LIMS2-004 protein_coding Homo_sapiens 0 569
ENST00000409754 LIMS2-008 protein_coding Homo_sapiens 0 370
ENST00000409808 LIMS2-002 protein_coding Homo_sapiens 0 569
ENST00000410011 LIMS2-003 protein_coding Homo_sapiens 0 569
ENST00000410038 LIMS2-006 protein_coding Homo_sapiens 0 370
ENST00000410093 LIMS1-006 protein_coding Homo_sapiens 0 1160
ENST00000413578 LIMS2-013 nonsense_mediated_decay Homo_sapiens 0 195
ENST00000413601 LIMS3L-001 protein_coding Homo_sapiens 0 414
ENST00000414829 LIMS1-005 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000422797 LIMS1-004 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000426981 LIMS2-007 protein_coding Homo_sapiens 0 195
ENST00000428064 LIMS1-007 protein_coding Homo_sapiens 0 676
ENST00000434274 LIMS1-011 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000437679 LIMS3-001 protein_coding Homo_sapiens 0 414
ENST00000449684 LIMS1-008 processed_transcript Homo_sapiens 0 219
ENST00000462817 LIMS1-009 processed_transcript Homo_sapiens 0 420
ENST00000466410 LIMS2-011 retained_intron Homo_sapiens 2e-23 115
ENST00000469300 LIMS2-014 retained_intron Homo_sapiens 4e-18 99
ENST00000474038 LIMS1-010 retained_intron Homo_sapiens 0 420
ENST00000476932 LIMS2-017 retained_intron Homo_sapiens 0 448
ENST00000479168 LIMS3-005 retained_intron Homo_sapiens 0 486
ENST00000480598 LIMS3L-002 retained_intron Homo_sapiens 0 414
ENST00000480744 LIMS1-012 processed_transcript Homo_sapiens 0 521
ENST00000482065 LIMS3-003 retained_intron Homo_sapiens 0 414
ENST00000484252 LIMS2-015 retained_intron Homo_sapiens 2e-23 115
ENST00000487150 LIMS3-004 processed_transcript Homo_sapiens 0 213
ENST00000496653 LIMS1-013 retained_intron Homo_sapiens 0 492
ENST00000542845 LIMS1-201 protein_coding Homo_sapiens 0 1362
ENST00000544547 LIMS1-202 protein_coding Homo_sapiens 0 1160
ENST00000545738 LIMS2-018 protein_coding Homo_sapiens 0 569
ENST00000603767 LIMS3-001 nonsense_mediated_decay Homo_sapiens 0 1308
ENST00000612860 LIMS2-201 protein_coding Homo_sapiens 0 370

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