C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and senescent cell antigen-like domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020078 Lims1-001 ENSMUSG00000019920 10090 + 10:58323466-58424691 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020078
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020078 16.505±5.67 5.053±0.67 20.350±2.39 6.191±3.81 9.104±1.12 10.649±2.09 5.950±1.94 7.772±1.13 9.919±8.52 27.502±2.29 1.577±0.70 17.745±7.02 17.293±7.09 2.702±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0002 VISTA 10:58082278-58683620
CIL_00010T CIL_00010T_0002 CGP 10:58255497-58424691
CIL_00010W CIL_00010W_0002 CGP 10:58323466-58494155

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007160 IMP cell-matrix adhesion
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0016337 IMP single organismal cell-cell adhesion
GO:0043009 IMP chordate embryonic development
GO:0043066 IGI negative regulation of apoptotic process
GO:0045216 IGI cell-cell junction organization
GO:0050680 IGI negative regulation of epithelial cell proliferation
GO:2000178 IGI negative regulation of neural precursor cell proliferation
GO:2000346 IGI negative regulation of hepatocyte proliferation
GO:2001046 IGI positive regulation of integrin-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000033980 lims1-201 protein_coding Danio_rerio 0 815
ENST00000324938 LIMS2-005 protein_coding Homo_sapiens 0 638
ENST00000332345 LIMS1-002 protein_coding Homo_sapiens 0 1310
ENST00000338045 LIMS1-014 protein_coding Homo_sapiens 0 1310
ENST00000355119 LIMS2-001 protein_coding Homo_sapiens 0 638
ENST00000393310 LIMS1-001 protein_coding Homo_sapiens 0 1312
ENST00000409254 LIMS2-012 protein_coding Homo_sapiens 0 438
ENST00000409286 LIMS2-009 protein_coding Homo_sapiens 0 442
ENST00000409441 LIMS1-003 protein_coding Homo_sapiens 0 1314
ENST00000409455 LIMS2-004 protein_coding Homo_sapiens 0 638
ENST00000409754 LIMS2-008 protein_coding Homo_sapiens 0 438
ENST00000409808 LIMS2-002 protein_coding Homo_sapiens 0 638
ENST00000410011 LIMS2-003 protein_coding Homo_sapiens 0 638
ENST00000410038 LIMS2-006 protein_coding Homo_sapiens 0 438
ENST00000410093 LIMS1-006 protein_coding Homo_sapiens 0 1312
ENST00000413578 LIMS2-013 nonsense_mediated_decay Homo_sapiens 0 263
ENST00000413601 LIMS3L-001 protein_coding Homo_sapiens 0 213
ENST00000414829 LIMS1-005 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000422797 LIMS1-004 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000426981 LIMS2-007 protein_coding Homo_sapiens 0 263
ENST00000428064 LIMS1-007 protein_coding Homo_sapiens 0 730
ENST00000434274 LIMS1-011 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000437679 LIMS3-001 protein_coding Homo_sapiens 0 213
ENST00000449684 LIMS1-008 processed_transcript Homo_sapiens 0 222
ENST00000462817 LIMS1-009 processed_transcript Homo_sapiens 0 219
ENST00000466410 LIMS2-011 retained_intron Homo_sapiens 6.02558e-44 183
ENST00000469300 LIMS2-014 retained_intron Homo_sapiens 1e-38 167
ENST00000474038 LIMS1-010 retained_intron Homo_sapiens 0 219
ENST00000476932 LIMS2-017 retained_intron Homo_sapiens 0 516
ENST00000479168 LIMS3-005 retained_intron Homo_sapiens 0 285
ENST00000480598 LIMS3L-002 retained_intron Homo_sapiens 0 213
ENST00000480744 LIMS1-012 processed_transcript Homo_sapiens 0 484
ENST00000482065 LIMS3-003 retained_intron Homo_sapiens 0 213
ENST00000484252 LIMS2-015 retained_intron Homo_sapiens 5.04467e-44 183
ENST00000487150 LIMS3-004 processed_transcript Homo_sapiens 0 213
ENST00000496653 LIMS1-013 retained_intron Homo_sapiens 0 291
ENST00000542845 LIMS1-201 protein_coding Homo_sapiens 0 1310
ENST00000544547 LIMS1-202 protein_coding Homo_sapiens 0 1363
ENST00000545738 LIMS2-018 protein_coding Homo_sapiens 0 638
ENST00000603767 LIMS3-001 nonsense_mediated_decay Homo_sapiens 0 1107
ENST00000612860 LIMS2-201 protein_coding Homo_sapiens 0 438

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