C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor-type, Z polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393386 PTPRZ1-001 ENSG00000106278 9606 + 7:121873089-122062036 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLungMuscleOvaryPlacentaTestisENST00000393386
Transcript ID Adrenal Bladder Brain Breast Colon Lung Muscle Ovary Placenta Testis
ENST00000393386 0.014±0.00 0.012±0.00 10.131±3.42 0.043±0.00 1.151±0.00 0.111±0.00 0.015±0.00 0.097±0.00 0.017±0.00 0.130±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R1 CIL_0003R1_0001 CGP 7:121348851-122062036
CIL_0003R2 CIL_0003R2_0001 CGP 7:121873089-122144280

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0004725 ISS:IEA protein tyrosine phosphatase activity
GO:0005001 TAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 IPI:IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005887 TAS integral component of plasma membrane
GO:0006470 TAS:IEA protein dephosphorylation
GO:0007409 IEA axonogenesis
GO:0007417 TAS central nervous system development
GO:0007611 ISS learning or memory
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 ISS peptidyl-tyrosine dephosphorylation
GO:0048709 ISS oligodendrocyte differentiation
GO:0070445 ISS regulation of oligodendrocyte progenitor proliferation
GO:0072534 IEA perineuronal net

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090568 Ptprz1-201 protein_coding Mus_musculus 0 7614

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