C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393561 LAMB1-003 ENSG00000091136 9606 - 7:107923803-108002027 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000393561
Transcript ID Bladder Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000393561 8.327±0.00 1.717±0.00 5.468±0.00 2.522±0.00 4.107±0.00 3.038±0.00 1.943±0.00 10.707±0.00 38.680±0.00 4.797±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZV CIL_0008ZV_0001 VISTA 7:107646717-108248447
CIL_00063H CIL_00063H_0002 CGP 7:107923799-108130356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002979 Lamb1-001 protein_coding Mus_musculus 0 5969
ENSMUST00000169088 Lamb1-004 protein_coding Mus_musculus 0 5938
ENSMUST00000164919 Lamb1-005 nonsense_mediated_decay Mus_musculus 0 1760
ENSMUST00000169065 Lamb1-002 retained_intron Mus_musculus 0 1044
ENSMUST00000172134 Lamb1-007 retained_intron Mus_musculus 0 333
ENSMUST00000164009 Lamb1-008 retained_intron Mus_musculus 0 305

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