C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: drebrin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393565 DBN1-004 ENSG00000113758 9606 - 5:177456936-177473637 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393565
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393565 5.455±0.00 17.009±8.75 4.313±2.55 14.125±0.00 0.155±0.00 3.345±0.00 0.824±0.00 2.966±1.47 12.951±0.00 6.026±0.00 12.280±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0001 VISTA 5:177089375-177692188
CIL_0000XB CIL_0000XB_0002 CGP 5:177446445-177474401
CIL_0002YE CIL_0002YE_0001 CGP 5:177456608-177497606

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA:NAS actin binding
GO:0005515 IPI protein binding
GO:0005522 ISS profilin binding
GO:0005622 IEA intracellular
GO:0005737 NAS cytoplasm
GO:0007015 IEA:ISS actin filament organization
GO:0015629 ISS actin cytoskeleton
GO:0030425 NAS dendrite
GO:0042641 NAS actomyosin
GO:0048168 NAS regulation of neuronal synaptic plasticity
GO:0050773 NAS regulation of dendrite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021950 Dbn1-001 protein_coding Mus_musculus 0 2904
ENSMUST00000135705 Dbn1-003 retained_intron Mus_musculus 0 1537
ENSMUST00000109923 Dbn1-002 protein_coding Mus_musculus 0 1371
ENSMUST00000109921 Dbn1-009 protein_coding Mus_musculus 0 1288
ENSMUST00000139275 Dbn1-005 protein_coding Mus_musculus 0 747
ENSMUST00000124480 Dbn1-006 processed_transcript Mus_musculus 0 592
ENSMUST00000139516 Dbn1-008 retained_intron Mus_musculus 0 364
ENSMUST00000127867 Dbn1-007 retained_intron Mus_musculus 0 326
ENSMUST00000175813 Dbn1-010 retained_intron Mus_musculus 0 237

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