C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: huntingtin-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393939 HAP1-007 ENSG00000173805 9606 - 17:41720813-41734644 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMusclePlacentaTestisENST00000393939
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Placenta Testis
ENST00000393939 0.051±0.00 0.079±0.00 0.178±0.00 0.032±0.00 0.045±0.00 0.020±0.00 0.081±0.08 0.011±0.01 0.029±0.00 0.164±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BD CIL_0007BD_0001 CGP 17:41712326-41734644
CIL_0000TS CIL_0000TS_0002 CGP 17:41717742-41786931

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IEA mitochondrion
GO:0005764 IEA lysosome
GO:0005783 IEA endoplasmic reticulum
GO:0005856 TAS cytoskeleton
GO:0006887 IEA exocytosis
GO:0006914 IEA autophagy
GO:0007268 TAS synaptic transmission
GO:0007420 NAS brain development
GO:0008089 ISS anterograde axon cargo transport
GO:0008090 ISS retrograde axon cargo transport
GO:0008104 IMP protein localization
GO:0015031 IEA protein transport
GO:0015629 TAS actin cytoskeleton
GO:0016234 IDA inclusion body
GO:0017157 ISS regulation of exocytosis
GO:0030030 IEA cell projection organization
GO:0030054 IEA cell junction
GO:0031587 ISS positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0032230 ISS positive regulation of synaptic transmission, GABAergic
GO:0032901 ISS positive regulation of neurotrophin production
GO:0042995 IEA cell projection
GO:0044325 ISS ion channel binding
GO:0045202 IEA synapse
GO:0045742 ISS positive regulation of epidermal growth factor receptor signaling pathway
GO:0048011 ISS neurotrophin TRK receptor signaling pathway
GO:0048403 ISS brain-derived neurotrophic factor binding
GO:1902430 ISS negative regulation of beta-amyloid formation
GO:1902513 ISS regulation of organelle transport along microtubule
GO:1902857 ISS positive regulation of nonmotile primary cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103124 Hap1-001 protein_coding Mus_musculus 0 407
ENSMUST00000138603 Hap1-005 protein_coding Mus_musculus 0 407
ENSMUST00000146878 Hap1-004 protein_coding Mus_musculus 0 379
ENSMUST00000037912 Ssh2-001 protein_coding Mus_musculus 0.000000004 69
ENSMUST00000074912 2010012O05Rik-201 protein_coding Mus_musculus 0.0000006 62

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