C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393943 GABRA1-005 ENSG00000022355 9606 + 5:161847934-161897666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000393943
Transcript ID Brain Testis
ENST00000393943 18.022±0.00 0.152±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016Q CIL_00016Q_0002 CGP 5:161547063-161899969
CIL_00016P CIL_00016P_0002 CGP 5:161847191-162155536

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 ISS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0007165 IEA signal transduction
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0007268 TAS synaptic transmission
GO:0008144 ISS drug binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016917 ISS GABA receptor activity
GO:0030054 IEA cell junction
GO:0034220 IEA:TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0051932 ISS synaptic transmission, GABAergic
GO:0055085 TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020707 Gabra1-001 protein_coding Mus_musculus 0 2717
ENSMUST00000169305 Gabra1-004 processed_transcript Mus_musculus 0 326
ENSMUST00000132971 Gabra1-003 protein_coding Mus_musculus 0 318

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