C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394170 ZKSCAN5-001 ENSG00000196652 9606 + 7:99504950-99533822 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverPlacentaENST00000394170
Transcript ID Adrenal Brain Breast Kidney Liver Placenta
ENST00000394170 0.567±0.00 0.752±0.41 1.234±0.00 0.376±0.00 0.484±0.00 1.017±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TF CIL_0004TF_0001 CGP 7:99486519-99534700

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 NAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 NAS:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0008270 NAS zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085671 Zkscan5-001 protein_coding Mus_musculus 0 1816
ENSMUST00000161896 Zkscan5-003 nonsense_mediated_decay Mus_musculus 0 785
ENSMUST00000031601 Zkscan5-002 protein_coding Mus_musculus 0 527
ENSMUST00000161881 Zkscan5-005 protein_coding Mus_musculus 0 259
ENSMUST00000160162 Zkscan5-006 processed_transcript Mus_musculus 0 241
ENSMUST00000162168 Zkscan5-004 nonsense_mediated_decay Mus_musculus 0 193
ENSMUST00000062609 Zkscan4-001 protein_coding Mus_musculus 1e-38 167
ENSMUST00000117721 Zkscan3-004 protein_coding Mus_musculus 5e-37 161
ENSMUST00000070785 Zkscan3-003 protein_coding Mus_musculus 5e-37 161
ENSMUST00000116433 Zkscan3-002 protein_coding Mus_musculus 5e-37 161
ENSMUST00000116434 Zkscan3-001 protein_coding Mus_musculus 5e-37 161
ENSMUST00000099720 Zscan12-002 protein_coding Mus_musculus 6e-36 158
ENSMUST00000053293 Zscan12-001 protein_coding Mus_musculus 6e-36 158
ENSMUST00000076238 Gm10065-201 protein_coding Mus_musculus 2e-35 156
ENSMUST00000094116 Zscan25-201 protein_coding Mus_musculus 6e-31 141
ENSMUST00000110481 Zkscan8-002 protein_coding Mus_musculus 8e-25 121
ENSMUST00000156674 Zkscan8-003 protein_coding Mus_musculus 8e-25 121
ENSMUST00000045228 Zkscan8-001 protein_coding Mus_musculus 8e-25 121
ENSMUST00000057652 Zfp420-001 protein_coding Mus_musculus 0.000000000001 81
ENSMUST00000145952 Zfp420-003 processed_transcript Mus_musculus 0.000000000001 81
ENSMUST00000074876 Zfp420-002 protein_coding Mus_musculus 0.000000000001 81
ENSMUST00000161170 Zfp9-001 protein_coding Mus_musculus 0.00000001 68

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