C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sp9 transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394967 SP9-001 ENSG00000217236 9606 + 2:174334946-174338492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastMuscleOvaryPlacentaTestisENST00000394967
Transcript ID Brain Breast Muscle Ovary Placenta Testis
ENST00000394967 0.930±0.41 0.092±0.00 0.176±0.00 0.208±0.18 0.043±0.02 0.619±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0001 UCNEbase 2:173198009-174351945
CIL_0008JW CIL_0008JW_0001 VISTA 2:173820816-174422736
CIL_0008K1 CIL_0008K1_0001 VISTA 2:173824009-174425635
CIL_0008S8 CIL_0008S8_0001 VISTA 2:173876675-174477772
CIL_00096H CIL_00096H_0001 VISTA 2:174031315-174632386
CIL_0008GI CIL_0008GI_0001 VISTA 2:174038535-174640167
CIL_0008K2 CIL_0008K2_0001 VISTA 2:174042582-174643514
CIL_0004JE CIL_0004JE_0001 CGP 2:174072447-174338492
CIL_0001HA CIL_0001HA_0001 CGP 2:174334946-174395715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030326 IEA embryonic limb morphogenesis
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090813 Sp9-001 protein_coding Mus_musculus 0 3134
ENSMUST00000063918 Sp8-201 protein_coding Mus_musculus 0 496
ENSMUST00000100043 Sp5-001 protein_coding Mus_musculus 0 327

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