C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395601 SNTB1-001 ENSG00000172164 9606 - 8:120535745-120813273 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverENST00000395601
Transcript ID Brain Heart Kidney Liver
ENST00000395601 1.032±0.56 0.610±0.00 6.567±0.00 25.569±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008U CIL_00008U_0002 CGP 8:120380761-120542133
CIL_0002GD CIL_0002GD_0002 CGP 8:120445400-120813273
CIL_0002EA CIL_0002EA_0002 CGP 8:120535745-121641390

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006936 TAS muscle contraction
GO:0016010 TAS dystrophin-associated glycoprotein complex
GO:0030165 IEA PDZ domain binding
GO:0043234 IDA protein complex
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039769 Sntb1-001 protein_coding Mus_musculus 0 2200
ENSMUST00000110200 Sntb1-002 protein_coding Mus_musculus 0 1038
ENSMUST00000140574 Sntb1-003 processed_transcript Mus_musculus 0 623

Loading