C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor corepressor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395851 NCOR1-003 ENSG00000141027 9606 - 17:16031404-16194613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395851
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395851 8.100±0.00 7.982±0.00 2.465±0.00 3.875±1.82 4.214±0.77 6.784±1.48 2.802±1.71 6.744±0.00 4.555±0.00 2.944±0.00 4.566±2.92 10.175±4.39 5.817±2.59 12.131±2.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000H6 CIL_0000H6_0001 CGP 17:15976560-16045015
CIL_0000NU CIL_0000NU_0001 CGP 17:15999380-16218185
CIL_0006JO CIL_0006JO_0002 CGP 17:16029157-16351797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001102 IPI RNA polymerase II activating transcription factor binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003714 IMP transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005876 IDA spindle microtubule
GO:0006351 TAS transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016568 IEA chromatin modification
GO:0016580 IDA Sin3 complex
GO:0017053 IDA transcriptional repressor complex
GO:0035257 IPI nuclear hormone receptor binding
GO:0042826 IPI histone deacetylase binding
GO:0044212 ISS transcription regulatory region DNA binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046329 IDA negative regulation of JNK cascade
GO:0051225 IMP spindle assembly
GO:0072362 IMP regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter
GO:0072368 IMP regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter
GO:2000191 IC regulation of fatty acid transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101066 Ncor1-202 protein_coding Mus_musculus 0 6804
ENSMUST00000018645 Ncor1-001 protein_coding Mus_musculus 0 6804
ENSMUST00000101068 Ncor1-008 retained_intron Mus_musculus 0 3230
ENSMUST00000127471 Ncor1-009 protein_coding Mus_musculus 0 2953
ENSMUST00000101067 Ncor1-004 protein_coding Mus_musculus 0 2883
ENSMUST00000155486 Ncor1-007 protein_coding Mus_musculus 0 2128
ENSMUST00000037575 Ncor1-201 protein_coding Mus_musculus 0 2102
ENSMUST00000156740 Ncor1-013 protein_coding Mus_musculus 0 2102
ENSMUST00000155712 Ncor1-003 protein_coding Mus_musculus 0 2102
ENSMUST00000159069 Ncor1-002 protein_coding Mus_musculus 0 1206
ENSMUST00000151498 Ncor1-019 protein_coding Mus_musculus 0 1206
ENSMUST00000069456 Ncor1-010 protein_coding Mus_musculus 0 1127
ENSMUST00000161432 Ncor1-022 retained_intron Mus_musculus 0 957
ENSMUST00000162236 Ncor1-018 protein_coding Mus_musculus 0 789
ENSMUST00000161699 Ncor1-015 protein_coding Mus_musculus 0 787
ENSMUST00000161116 Ncor1-020 protein_coding Mus_musculus 0 680
ENSMUST00000161767 Ncor1-023 retained_intron Mus_musculus 0 651
ENSMUST00000131911 Ncor1-006 retained_intron Mus_musculus 0 640
ENSMUST00000161281 Ncor1-024 retained_intron Mus_musculus 0 623
ENSMUST00000141447 Ncor1-012 protein_coding Mus_musculus 0 601
ENSMUST00000117345 Gm6743-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000162077 Ncor1-016 retained_intron Mus_musculus 0 534
ENSMUST00000124027 Ncor1-011 retained_intron Mus_musculus 0 484
ENSMUST00000159224 Ncor1-021 protein_coding Mus_musculus 0 468
ENSMUST00000161288 Ncor1-017 protein_coding Mus_musculus 0 396
ENSMUST00000160171 Ncor1-014 retained_intron Mus_musculus 0 337

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