C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoglucomutase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396396 PGM5-001 ENSG00000154330 9606 + 9:68356899-68531061 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396396 5.535±0.00 10.655±0.00 1.452±0.00 0.857±0.11 5.555±1.69 26.535±16.03 12.794±7.12 4.536±0.00 24.137±23.90 3.720±1.41 6.788±5.09 6.076±5.39 3.223±1.87 6.496±4.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050R CIL_00050R_0002 CGP 9:68302867-68531061

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0001725 IDA stress fiber
GO:0005198 NAS structural molecule activity
GO:0005515 IEA protein binding
GO:0005913 IDA cell-cell adherens junction
GO:0005914 IDA spot adherens junction
GO:0005925 IDA focal adhesion
GO:0005975 IEA carbohydrate metabolic process
GO:0007155 IEA cell adhesion
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0014704 IDA intercalated disc
GO:0016010 ISS dystrophin-associated glycoprotein complex
GO:0016868 IEA intramolecular transferase activity, phosphotransferases
GO:0030018 IBA Z disc
GO:0030055 IEA cell-substrate junction
GO:0042383 IDA sarcolemma
GO:0043034 IDA costamere

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047666 Pgm5-001 protein_coding Mus_musculus 0 2368
ENSMUST00000129127 Pgm5-003 retained_intron Mus_musculus 0 1040
ENSMUST00000133692 Pgm5-004 processed_transcript Mus_musculus 0 760
ENSMUST00000150339 Pgm5-002 retained_intron Mus_musculus 0 512

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