C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoglucomutase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047666 Pgm5-001 ENSMUSG00000041731 10090 - 19:24683016-24861855 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047666 22.863±18.42 7.059±2.81 98.137±1.99 1.383±0.80 2.467±0.87 40.953±7.22 19.339±2.01 4.047±0.71 0.262±0.16 13.565±2.59 2.910±0.79 29.308±14.97 1.617±2.57 1.287±1.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086N CIL_00086N_0002 VISTA 19:24151986-24754280
CIL_0009AF CIL_0009AF_0002 VISTA 19:24645396-25246544

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0001725 IBA stress fiber
GO:0005515 IPI protein binding
GO:0005913 IEA cell-cell adherens junction
GO:0005914 IBA spot adherens junction
GO:0005925 IBA focal adhesion
GO:0006006 IEA glucose metabolic process
GO:0007155 IEA cell adhesion
GO:0009898 IBA cytoplasmic side of plasma membrane
GO:0014704 IBA intercalated disc
GO:0016010 IDA dystrophin-associated glycoprotein complex
GO:0030018 IDA Z disc
GO:0030055 IDA cell-substrate junction
GO:0042383 IDA sarcolemma
GO:0043034 IBA costamere

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396392 PGM5-004 protein_coding Homo_sapiens 0 1644
ENST00000396396 PGM5-001 protein_coding Homo_sapiens 0 2368
ENST00000421970 PGM5P4-001 processed_pseudogene Homo_sapiens 0 268
ENST00000431583 PGM5-003 protein_coding Homo_sapiens 0 512
ENST00000472639 PGM5-002 processed_transcript Homo_sapiens 0 617
ENST00000496758 PGM5-005 retained_intron Homo_sapiens 0 353
ENST00000604870 PGM5-006 processed_transcript Homo_sapiens 0 1079

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