C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396504 POLR3H-201 ENSG00000100413 9606 - 22:41525804-41544489 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverOvaryPlacentaTestisENST00000396504
Transcript ID Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000396504 8.044±0.00 4.084±0.00 32.662±27.87 8.045±6.02 3.173±1.75 8.451±5.03 12.370±0.00 8.608±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065P CIL_00065P_0001 CGP 22:41459717-41528989
CIL_00065O CIL_00065O_0001 CGP 22:41469125-41544606
CIL_0000V8 CIL_0000V8_0002 CGP 22:41525804-41577741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003899 IDA:IEA DNA-directed RNA polymerase activity
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005666 IDA DNA-directed RNA polymerase III complex
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0006139 IDA nucleobase-containing compound metabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0006383 IDA transcription from RNA polymerase III promoter
GO:0006384 IBA transcription initiation from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0010467 TAS gene expression
GO:0032481 TAS positive regulation of type I interferon production
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045087 TAS innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023113 Polr3h-201 protein_coding Mus_musculus 0 800
ENSMUST00000023116 Aco2-001 protein_coding Mus_musculus 0 241
ENSMUST00000181698 Gm5421-001 processed_pseudogene Mus_musculus 7.00649e-45 187

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