C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plectin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398774 PLEC-007 ENSG00000178209 9606 - 8:143915153-143944737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398774 6.844±0.00 27.867±0.00 2.716±0.00 8.329±0.00 12.844±0.00 15.457±0.00 17.401±0.00 5.381±0.00 2.524±0.00 9.823±0.00 59.504±51.66 32.712±0.00 8.389±0.00 16.489±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FZ CIL_0006FZ_0002 CGP 8:143857324-143976734
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_0002GS CIL_0002GS_0001 CGP 8:143915147-144012772

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 NAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0008307 IMP structural constituent of muscle
GO:0016528 ISS sarcoplasm
GO:0030056 IDA hemidesmosome
GO:0030198 TAS extracellular matrix organization
GO:0030506 IPI ankyrin binding
GO:0031581 IDA hemidesmosome assembly
GO:0034329 TAS cell junction assembly
GO:0042383 IDA sarcolemma
GO:0043034 TAS costamere
GO:0044822 IDA poly(A) RNA binding
GO:0045111 IDA intermediate filament cytoskeleton
GO:0046417 IEA chorismate metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169108 Plec-013 protein_coding Mus_musculus 0 15290
ENSMUST00000071869 Plec-202 protein_coding Mus_musculus 0 15200
ENSMUST00000171562 Plec-016 protein_coding Mus_musculus 0 15200
ENSMUST00000076442 Plec-002 protein_coding Mus_musculus 0 15200
ENSMUST00000169714 Plec-005 protein_coding Mus_musculus 0 15200
ENSMUST00000169438 Plec-006 protein_coding Mus_musculus 0 15200
ENSMUST00000072692 Plec-003 protein_coding Mus_musculus 0 15200
ENSMUST00000023226 Plec-004 protein_coding Mus_musculus 0 15200
ENSMUST00000074834 Plec-001 protein_coding Mus_musculus 0 15200
ENSMUST00000073418 Plec-203 protein_coding Mus_musculus 0 15140
ENSMUST00000054449 Plec-201 protein_coding Mus_musculus 0 15140
ENSMUST00000080857 Plec-204 protein_coding Mus_musculus 0 15000
ENSMUST00000089610 Plec-205 protein_coding Mus_musculus 0 15000
ENSMUST00000165210 Plec-015 protein_coding Mus_musculus 0 3121
ENSMUST00000171634 Plec-011 protein_coding Mus_musculus 0 2571
ENSMUST00000165453 Plec-014 protein_coding Mus_musculus 0 2061
ENSMUST00000167754 Plec-007 protein_coding Mus_musculus 0 1917
ENSMUST00000169289 Plec-010 protein_coding Mus_musculus 0 1917
ENSMUST00000166428 Plec-008 protein_coding Mus_musculus 0 1842
ENSDART00000014024 plecb-201 protein_coding Danio_rerio 0 1162
ENSDART00000144558 plecb-001 protein_coding Danio_rerio 0 1162
ENSMUST00000172269 Sptbn4-201 protein_coding Mus_musculus 0.000006 60
ENSMUST00000152572 Sptbn4-002 protein_coding Mus_musculus 0.000006 60
ENSMUST00000138087 Sptbn4-007 processed_transcript Mus_musculus 0.000006 60
ENSMUST00000011895 Sptbn4-001 protein_coding Mus_musculus 0.000006 60
ENSMUST00000008991 Sptbn2-201 protein_coding Mus_musculus 0.00007 57

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