C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398975 COL13A1-006 ENSG00000197467 9606 + 10:69927088-69959015 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyOvaryPlacentaENST00000398975
Transcript ID Adrenal Colon Kidney Ovary Placenta
ENST00000398975 0.409±0.00 0.350±0.00 0.195±0.00 0.674±0.00 0.172±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0001 VISTA 10:69276019-69878973

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000145469 Col13a1-006 protein_coding Mus_musculus 0 1230
ENSMUST00000105452 Col13a1-005 protein_coding Mus_musculus 0 1062
ENSMUST00000105451 Col13a1-003 processed_transcript Mus_musculus 0 939
ENSMUST00000105454 Col13a1-001 protein_coding Mus_musculus 0 693
ENSMUST00000105453 Col13a1-004 protein_coding Mus_musculus 0 693
ENSMUST00000051826 Col13a1-002 retained_intron Mus_musculus 0 307
ENSMUST00000153120 Col13a1-007 retained_intron Mus_musculus 0 220

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