C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399021 NPM1P31-001 ENSG00000214807 9606 + 10:124867510-124868326 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainKidneyMuscleTestisENST00000399021
Transcript ID Adipose Adrenal Brain Kidney Muscle Testis
ENST00000399021 0.014±0.00 0.031±0.00 0.030±0.00 0.015±0.00 0.014±0.00 0.033±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084V CIL_00084V_0001 VISTA 10:124437964-125038882
CIL_0001V2 CIL_0001V2_0001 CGP 10:124801785-124988189

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 797
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 797
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 795
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 592
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 580
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 409

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