C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109354 Npm1-002 ENSMUSG00000057113 10090 - 11:33154927-33163077 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000109354
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000109354 5.457±0.61 4.314±0.00 18.813±0.00 21.828±2.41 12.610±3.26 9.659±0.00 117.711±88.49 8.476±0.00 61.425±49.83 241.301±186.66 7.933±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024
CIL_0004OL CIL_0004OL_0002 CGP 11:33152287-33203589

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000055 IMP ribosomal large subunit export from nucleus
GO:0000056 IDA ribosomal small subunit export from nucleus
GO:0001652 IDA granular component
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 ISS cytoplasm
GO:0005813 ISS centrosome
GO:0005829 IDA cytosol
GO:0006407 IDA rRNA export from nucleus
GO:0006884 IDA cell volume homeostasis
GO:0006913 IDA nucleocytoplasmic transport
GO:0007098 ISS centrosome cycle
GO:0007569 ISS cell aging
GO:0008104 IMP protein localization
GO:0008284 IDA positive regulation of cell proliferation
GO:0008285 ISS negative regulation of cell proliferation
GO:0010824 IMP regulation of centrosome duplication
GO:0010825 IGI positive regulation of centrosome duplication
GO:0015934 IDA large ribosomal subunit
GO:0015935 IDA small ribosomal subunit
GO:0016049 IDA cell growth
GO:0016607 IDA nuclear speck
GO:0019843 IDA rRNA binding
GO:0030529 ISO ribonucleoprotein complex
GO:0031328 IDA positive regulation of cellular biosynthetic process
GO:0042273 IDA ribosomal large subunit biogenesis
GO:0042274 IDA ribosomal small subunit biogenesis
GO:0043023 ISO ribosomal large subunit binding
GO:0043024 ISO ribosomal small subunit binding
GO:0043516 IGI regulation of DNA damage response, signal transduction by p53 class mediator
GO:0045860 IDA positive regulation of protein kinase activity
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0051059 ISS NF-kappaB binding
GO:0051082 ISS unfolded protein binding
GO:0051259 ISO protein oligomerization
GO:0051726 IMP regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290855 CLEC2D-001 protein_coding Homo_sapiens 0 778
ENST00000296930 NPM1-001 protein_coding Homo_sapiens 0 1035
ENST00000343743 NPM1P14-001 processed_pseudogene Homo_sapiens 0 588
ENST00000351986 NPM1-002 protein_coding Homo_sapiens 0 776
ENST00000393820 NPM1-003 protein_coding Homo_sapiens 0 1149
ENST00000396690 CLEC2D-001 processed_pseudogene Homo_sapiens 0 736
ENST00000399021 NPM1P31-001 processed_pseudogene Homo_sapiens 0 797
ENST00000399556 NPM1P46-001 processed_pseudogene Homo_sapiens 0 797
ENST00000403105 NPM1P37-001 processed_pseudogene Homo_sapiens 0 828
ENST00000403835 NPM1P38-001 processed_pseudogene Homo_sapiens 0 575
ENST00000412580 NPM1P32-001 processed_pseudogene Homo_sapiens 0 601
ENST00000412758 NPM1P40-001 processed_pseudogene Homo_sapiens 0 608
ENST00000414095 NPM1P4-001 processed_pseudogene Homo_sapiens 0 492
ENST00000423757 NPM1P12-001 processed_pseudogene Homo_sapiens 0 311
ENST00000426339 NPM1P26-001 processed_pseudogene Homo_sapiens 0 717
ENST00000427761 NPM1P22-001 processed_pseudogene Homo_sapiens 0 778
ENST00000428039 NPM1P24-001 processed_pseudogene Homo_sapiens 0 802
ENST00000429734 NPM1P25-001 processed_pseudogene Homo_sapiens 0 817
ENST00000434232 NPM1P18-001 processed_pseudogene Homo_sapiens 0 527
ENST00000438918 NPM1P33-001 processed_pseudogene Homo_sapiens 0 815
ENST00000440193 NPM1P23-001 transcribed_processed_pseudogene Homo_sapiens 0 603
ENST00000443470 NPM1P51-001 processed_pseudogene Homo_sapiens 0 706
ENST00000444971 CLEC2D-017 nonsense_mediated_decay Homo_sapiens 0 523
ENST00000448027 NPM1P49-001 processed_pseudogene Homo_sapiens 0 399
ENST00000449818 NPM1P39-001 processed_pseudogene Homo_sapiens 0 894
ENST00000450070 NPM1P19-001 processed_pseudogene Homo_sapiens 0 510
ENST00000452663 NPM1P13-001 processed_pseudogene Homo_sapiens 0 621
ENST00000453156 NPM1P9-001 processed_pseudogene Homo_sapiens 0 704
ENST00000458237 NPM1P8-001 processed_pseudogene Homo_sapiens 0 771
ENST00000483112 NPM1P29-001 processed_pseudogene Homo_sapiens 0 699
ENST00000502784 NPM1P27-001 processed_pseudogene Homo_sapiens 0 918
ENST00000512920 NPM1P41-001 processed_pseudogene Homo_sapiens 8.96831e-44 182
ENST00000513394 NPM1P21-001 processed_pseudogene Homo_sapiens 0 854
ENST00000517671 NPM1-004 protein_coding Homo_sapiens 0 996
ENST00000518264 NPM1P52-001 processed_pseudogene Homo_sapiens 0 464
ENST00000518587 NPM1-008 retained_intron Homo_sapiens 0 627
ENST00000519955 NPM1-011 retained_intron Homo_sapiens 0 259
ENST00000521088 NPM1P6-001 processed_pseudogene Homo_sapiens 0 915
ENST00000521260 NPM1-009 retained_intron Homo_sapiens 0 211
ENST00000521672 NPM1-005 protein_coding Homo_sapiens 0 479
ENST00000521710 NPM1-010 retained_intron Homo_sapiens 0 213
ENST00000523339 NPM1-006 retained_intron Homo_sapiens 0 233
ENST00000523622 NPM1-007 protein_coding Homo_sapiens 8e-33 143
ENST00000532878 NPM1P50-001 processed_pseudogene Homo_sapiens 0 743
ENST00000533043 NPM1P35-001 processed_pseudogene Homo_sapiens 0 808
ENST00000557228 NPM1P5-001 processed_pseudogene Homo_sapiens 0 676
ENST00000564888 RP11-382N13.3-001 processed_pseudogene Homo_sapiens 0 675
ENST00000578162 NPM1P2-001 processed_pseudogene Homo_sapiens 0 649
ENST00000583151 NPM1P45-001 processed_pseudogene Homo_sapiens 0 444
ENST00000588959 RP11-188I24.1-001 processed_pseudogene Homo_sapiens 3e-22 108

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