C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402203 TNRC6B-001 ENSG00000100354 9606 + 22:40045474-40323360 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENST00000402203
Transcript ID Placenta Testis
ENST00000402203 0.408±0.03 8.381±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W3 CIL_0005W3_0001 CGP 22:39994949-40335808
CIL_0006F2 CIL_0006F2_0001 CGP 22:40044817-40369367

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0006417 IEA regulation of translation
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0031047 IMP gene silencing by RNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0060213 IMP positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 IMP positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067689 Tnrc6b-201 protein_coding Mus_musculus 0 3923
ENSDART00000153428 tnrc6b-001 protein_coding Danio_rerio 6e-20 104
ENSDART00000114402 tnrc6b-201 protein_coding Danio_rerio 8e-19 100

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