C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRIO and F-actin binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403663 TRIOBP-006 ENSG00000100106 9606 + 22:37746233-37774140 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000403663
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000403663 33.963±0.00 29.861±0.00 2.142±0.00 2.358±1.18 16.980±9.79 12.433±5.04 13.144±10.08 11.630±10.08 6.648±3.61 13.889±11.17 3.255±0.00 38.908±24.66 52.038±11.49 29.543±4.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_00040B CIL_00040B_0001 CGP 22:37686414-37776556
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0001D1 CIL_0001D1_0001 CGP 22:37697004-37807436

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0007067 IEA mitotic nuclear division
GO:0015629 IDA actin cytoskeleton
GO:0017049 NAS GTP-Rho binding
GO:0030047 NAS actin modification
GO:0031625 IPI ubiquitin protein ligase binding
GO:0045159 NAS myosin II binding
GO:0051015 IDA actin filament binding
GO:0051016 NAS barbed-end actin filament capping
GO:1900026 IDA positive regulation of substrate adhesion-dependent cell spreading

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109688 Triobp-201 protein_coding Mus_musculus 0 2010
ENSMUST00000109687 Triobp-005 protein_coding Mus_musculus 0 2010
ENSMUST00000109689 Triobp-002 protein_coding Mus_musculus 0 2010
ENSMUST00000109690 Triobp-001 protein_coding Mus_musculus 0 2010
ENSMUST00000130663 Triobp-007 protein_coding Mus_musculus 0 876
ENSMUST00000129922 Triobp-008 processed_transcript Mus_musculus 0 440
ENSMUST00000144151 Triobp-006 protein_coding Mus_musculus 0 363

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