C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sidekick homolog 1 (chicken)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085774 Sdk1-001 ENSMUSG00000039683 10090 + 5:141241490-142215586 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085774 0.566±0.31 1.064±0.22 0.588±0.40 0.716±0.21 0.801±0.06 0.963±0.15 0.053±0.01 0.118±0.02 0.070±0.02 0.215±0.07 0.054±0.02 1.135±0.35 0.210±0.15 0.167±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M9 CIL_0002M9_0002 CGP 5:140872999-142215586
CIL_0002MA CIL_0002MA_0002 CGP 5:141241490-142462014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113318 SDK2 (2 of 2)-201 protein_coding Danio_rerio 0 311
ENSDART00000153886 SDK2 (2 of 2)-001 protein_coding Danio_rerio 0 311
ENST00000389531 SDK1-004 protein_coding Homo_sapiens 0 4879
ENST00000404826 SDK1-001 protein_coding Homo_sapiens 0 6809
ENST00000466611 SDK1-003 processed_transcript Homo_sapiens 0 1027
ENST00000476701 SDK1-002 retained_intron Homo_sapiens 0 2625
ENST00000615806 SDK1-201 protein_coding Homo_sapiens 0 6787

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