C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exportin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404992 XPO1-006 ENSG00000082898 9606 - 2:61478338-61537110 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverLungOvaryENST00000404992
Transcript ID Bladder Brain Colon Heart Liver Lung Ovary
ENST00000404992 1.474±0.00 5.012±0.00 6.140±0.00 1.654±0.12 4.673±0.00 6.756±0.00 4.326±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N6 CIL_0007N6_0001 UCNEbase 2:61187520-61525646
CIL_0000ZI CIL_0000ZI_0002 CGP 2:61477849-61854143

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000055 IMP ribosomal large subunit export from nucleus
GO:0000056 IMP ribosomal small subunit export from nucleus
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0003723 IEA RNA binding
GO:0005215 TAS transporter activity
GO:0005487 IMP nucleocytoplasmic transporter activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005635 TAS nuclear envelope
GO:0005642 IDA annulate lamellae
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006611 IMP protein export from nucleus
GO:0006886 IEA intracellular protein transport
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008536 IEA Ran GTPase binding
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0030512 TAS negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030529 IDA ribonucleoprotein complex
GO:0031965 IDA nuclear membrane
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0051028 IEA mRNA transport
GO:0075733 TAS intracellular transport of virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109551 Xpo1-202 protein_coding Mus_musculus 0 4920
ENSMUST00000020538 Xpo1-201 protein_coding Mus_musculus 0 4920
ENSMUST00000102869 Xpo1-001 protein_coding Mus_musculus 0 4920
ENSMUST00000102870 Xpo1-002 protein_coding Mus_musculus 0 4564
ENSDART00000154823 xpo1b-001 protein_coding Danio_rerio 0 1993
ENSMUST00000149371 Xpo1-003 processed_transcript Mus_musculus 0 1315
ENSMUST00000150750 Xpo1-004 protein_coding Mus_musculus 0 569
ENSMUST00000136235 Xpo1-005 protein_coding Mus_musculus 0 448

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